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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014380 through 18771 annotations produced 1 hits



Rho-like (RhoL):

Annotation Number : CG9366
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014380
Gbrowse : chr3R:5322916-5328299 (-) // 100.0 //
Probeset : 1631183_at
Accessions : protein= NP_524292;, nucleotide= NM_079568;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electron
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0014380.
BDGP gene expression has embryonic in situ data for RhoL: 17 pix of staining in 6 body parts.
Homophila reports that CG9366 is a close match (2e-11) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
TRiP has 2 RNAi stocks for FBgn0014380 available for purchase.
VDRC has 1 RNAi stocks for FBgn0014380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 54 of 4 0.30Down
Head192 134 of 4 0.70Down
Eye198 74 of 4 0.70Down
Thoracicoabdominal ganglion102 44 of 4 0.40Down
Salivary gland668 94 of 4 2.37Up
Crop653 84 of 4 2.30Up
Midgut2069 114 of 4 7.30Up
Tubule961 214 of 4 3.40Up
Hindgut512 34 of 4 1.80Up
Heart427 334 of 4 1.51Up
Fat body180 264 of 4 0.64Down
Ovary45 24 of 4 0.20Down
Testis140 24 of 4 0.50Down
Male accessory glands680 144 of 4 2.40Up
Virgin spermatheca70 34 of 4 0.25Down
Mated spermatheca80 64 of 4 0.29Down
Adult carcass216 144 of 4 0.80Down
Larval CNS115 134 of 4 0.41Down
Larval Salivary gland490 214 of 4 1.74Up
Larval midgut1649 184 of 4 5.84Up
Larval tubule1696 474 of 4 6.00Up
Larval hindgut676 124 of 4 2.39Up
Larval fat body138 274 of 4 0.50Down
Larval trachea648 534 of 4 2.30Up
Larval carcass321 194 of 4 1.14None
S2 cells (growing)823 144 of 4 2.92Up
Whole fly282 144 of 4

Looking for FBgn0014380. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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