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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014388 through 18771 annotations produced 2 hits



chr3L:3402798-3417927 (-) // 100.0 // (Sprouty):

Annotation Number : CG1921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635677_a_at
Accessions : protein= , nucleotide= NP_523902; /// NP_728881;
Pathway : "0001745 // compound eye morphogenesis // inferred from mutant phenotype /// 0001763 // morphogenesis of a branching str
Interpro : open tracheal system // inferred from mutant phenotype /// 0007429 // secondary branching
FlyMine data for full length.
BioGrid reports that CG1921 interacts with CG2194 Dmel CG34168 CG5358 CG8079 CG4672 CG5188 CG7570 CG8430 CG9653 CG3166 CG12676 CG12676 CG3340 CG3340 CG2845 CG9375 CG9375 CG4385 CG9949 CG9949 CG10079 CG10079 CG1389 CG5619 CG5123 CG5123 CG6721 CG4531 CG4531 CG4531 CG1004 CG10334 CG10334 CG7223 CG9842 CG9842 CG4209 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain347 ± 74 of 4 4.30Up
Head102 ± 74 of 4 1.30None
Eye156 ± 74 of 4 1.96Up
Thoracicoabdominal ganglion457 ± 84 of 4 5.70Up
Salivary gland68 ± 82 of 4 0.86None
Crop129 ± 84 of 4 1.60Up
Midgut272 ± 74 of 4 3.40Up
Tubule97 ± 134 of 4 1.20None
Hindgut140 ± 124 of 4 1.80Up
Heart215 ± 164 of 4 2.70Up
Fat body92 ± 124 of 4 1.15None
Ovary27 ± 24 of 4 0.30Down
Testis34 ± 14 of 4 0.40Down
Male accessory glands57 ± 74 of 4 0.70None
Virgin spermatheca65 ± 64 of 4 0.83None
Mated spermatheca79 ± 44 of 4 1.00None
Adult carcass134 ± 114 of 4 1.70Up
Larval CNS220 ± 194 of 4 2.76Up
Larval Salivary gland44 ± 42 of 4 0.56Down
Larval midgut261 ± 214 of 4 3.28Up
Larval tubule53 ± 34 of 4 0.70Down
Larval hindgut154 ± 74 of 4 1.94Up
Larval fat body88 ± 24 of 4 1.10None
Larval trachea376 ± 314 of 4 4.72Up
Larval carcass148 ± 224 of 4 1.86None
S2 cells (growing)1831 ± 704 of 422.95Up
Whole fly79 ± 74 of 4



chr3L:3401136-3424935 (-) // 100.0 // (Sprouty):

Annotation Number : CG1921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635819_at
Accessions : protein= , nucleotide= NP_523902; /// NP_728881;
Pathway : "0001745 // compound eye morphogenesis // inferred from mutant phenotype /// 0001763 // morphogenesis of a branching str
Interpro : open tracheal system // inferred from mutant phenotype /// 0007429 // secondary branching
FlyMine data for full length.
BioGrid reports that CG1921 interacts with CG2194 Dmel CG34168 CG5358 CG8079 CG4672 CG5188 CG7570 CG8430 CG9653 CG3166 CG12676 CG12676 CG3340 CG3340 CG2845 CG9375 CG9375 CG4385 CG9949 CG9949 CG10079 CG10079 CG1389 CG5619 CG5123 CG5123 CG6721 CG4531 CG4531 CG4531 CG1004 CG10334 CG10334 CG7223 CG9842 CG9842 CG4209 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain486 ± 214 of 4 3.40Up
Head200 ± 164 of 4 1.40Up
Eye204 ± 134 of 4 1.45Up
Thoracicoabdominal ganglion434 ± 84 of 4 3.10Up
Salivary gland74 ± 54 of 4 0.52Down
Crop221 ± 64 of 4 1.60Up
Midgut371 ± 284 of 4 2.60Up
Tubule86 ± 104 of 4 0.60Down
Hindgut177 ± 84 of 4 1.30None
Heart296 ± 414 of 4 2.10Up
Fat body192 ± 254 of 4 1.37None
Ovary47 ± 34 of 4 0.30Down
Testis25 ± 24 of 4 0.20Down
Male accessory glands65 ± 54 of 4 0.50Down
Virgin spermatheca116 ± 34 of 4 0.82None
Mated spermatheca149 ± 74 of 4 1.06None
Adult carcass113 ± 74 of 4 0.80None
Larval CNS431 ± 744 of 4 3.05Up
Larval Salivary gland27 ± 44 of 4 0.19Down
Larval midgut374 ± 404 of 4 2.65Up
Larval tubule47 ± 64 of 4 0.30Down
Larval hindgut264 ± 174 of 4 1.87Up
Larval fat body157 ± 44 of 4 1.10None
Larval trachea505 ± 264 of 4 3.58Up
Larval carcass189 ± 144 of 4 1.34None
S2 cells (growing)1835 ± 824 of 412.99Up
Whole fly141 ± 174 of 4

Looking for FBgn0014388. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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