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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0014395 through 18771 annotations produced 1 hits

touch insensitive larva B (tilB):

Annotation Number : CG14620
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014395
Gbrowse : chrX:21851780-21853303 (+) // 100.0 //
Probeset : 1640477_at
Accessions : protein= NP_608460;, nucleotide= NM_134616;
Pathway : veined wing generated song production // inferred from mutant phenotype /// 0050910 // detection of mechanical stimulus
FlyMine data for FBgn0014395.
BioGrid reports that CG14620 interacts with CG5189 .
TRiP has 1 RNAi stocks for FBgn0014395 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014395 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head0 00 of 4 0.10Down
Eye1 00 of 4 0.09Down
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland2 00 of 4 0.12Down
Crop1 00 of 4 0.10Down
Midgut28 31 of 4 1.70Up
Tubule6 00 of 4 0.40Down
Hindgut1 00 of 4 0.10Down
Heart1 00 of 4 0.07Down
Fat body3 20 of 4 0.19Down
Ovary7 10 of 4 0.40Down
Testis190 44 of 411.50Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.23Down
Mated spermatheca1 00 of 4 0.11Down
Adult carcass3 10 of 4 0.20Down
Larval CNS3 21 of 4 0.22Down
Larval Salivary gland6 10 of 4 0.38Down
Larval midgut29 32 of 4 1.78Up
Larval tubule4 20 of 4 0.30Down
Larval hindgut3 10 of 4 0.21Down
Larval fat body44 173 of 4 2.70None
Larval trachea3 30 of 4 0.21Down
Larval carcass4 10 of 4 0.27Down
S2 cells (growing)2 00 of 4 0.17Down
Whole fly16 20 of 4

Looking for FBgn0014395. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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