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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014396 through 18771 annotations produced 2 hits



TIMELESS (tim):

Annotation Number : CG3234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014396
Gbrowse : chr2L:3493975-3506741 (-) // 100.0 //
Probeset : 1634188_a_at
Accessions : protein= NP_001014463; /// NP_001033872; /// NP_001137780; /// NP_001137781; /// NP_523468; /// NP_722912; /// NP_722913; /// NP_722914;, nucleotide= NM_001014463; /// NM_001038783; /// NM_001144308; /// NM_001144309; /// NM_078744; /// NM_164540; /// NM_164541; /// NM_164542;
Pathway : sleep // inferred from mutant phenotype /// 0045187 // regulation of circadian sleep/wake cycle
Interpro : sleep // traceable author statement /// 0045475 // locomotor rhythm // inferred from genetic interaction /// 0045475 //
FlyMine data for FBgn0014396.
BDGP gene expression has embryonic in situ data for tim: 38 pix of staining in 5 body parts.
BioGrid reports that CG3234 interacts with CG4778 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG3234 .
TRiP has 2 RNAi stocks for FBgn0014396 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014396 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 214 of 4 1.20None
Head570 634 of 4 4.60Up
Eye824 3124 of 4 6.57None
Thoracicoabdominal ganglion125 124 of 4 1.00None
Salivary gland568 334 of 4 4.53Up
Crop257 404 of 4 2.10Up
Midgut241 194 of 4 1.90Up
Tubule665 1643 of 4 5.30Up
Hindgut244 414 of 4 1.90None
Heart201 254 of 4 1.61None
Fat body192 314 of 4 1.54None
Ovary46 34 of 4 0.40None
Testis31 34 of 4 0.30None
Male accessory glands649 584 of 4 5.20Up
Virgin spermatheca243 444 of 4 1.94None
Mated spermatheca188 374 of 4 1.51None
Adult carcass198 144 of 4 1.60None
Larval CNS8 01 of 4 0.07Down
Larval Salivary gland9 20 of 4 0.07Down
Larval midgut34 80 of 4 0.27None
Larval tubule4 10 of 4 0.00Down
Larval hindgut3 00 of 4 0.03Down
Larval fat body22 33 of 4 0.20None
Larval trachea24 431 of 4 0.19None
Larval carcass6 10 of 4 0.06Down
S2 cells (growing)4 00 of 4 0.03Down
Whole fly125 344 of 4



TIMELESS (tim):

Annotation Number : CG3234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014396
Gbrowse : chr2L:3501039-3506741 (-) // 100.0 //
Probeset : 1631468_a_at
Accessions : protein= NP_001014463; /// NP_001033872; /// NP_001137780; /// NP_001137781; /// NP_523468; /// NP_722912; /// NP_722913; /// NP_722914;, nucleotide= NM_001014463; /// NM_001038783; /// NM_001144308; /// NM_001144309; /// NM_078744; /// NM_164540; /// NM_164541; /// NM_164542;
Pathway : sleep // inferred from mutant phenotype /// 0045187 // regulation of circadian sleep/wake cycle
Interpro : sleep // traceable author statement /// 0045475 // locomotor rhythm // inferred from genetic interaction /// 0045475 //
FlyMine data for FBgn0014396.
BDGP gene expression has embryonic in situ data for tim: 38 pix of staining in 5 body parts.
BioGrid reports that CG3234 interacts with CG4778 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG3234 .
TRiP has 2 RNAi stocks for FBgn0014396 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014396 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 24 of 4 1.40None
Head81 174 of 4 5.70Up
Eye45 144 of 4 3.17None
Thoracicoabdominal ganglion13 32 of 4 0.90None
Salivary gland108 174 of 4 7.58Up
Crop33 54 of 4 2.30None
Midgut47 54 of 4 3.30Up
Tubule90 342 of 4 6.30Up
Hindgut29 53 of 4 2.10None
Heart17 24 of 4 1.19None
Fat body12 61 of 4 0.89None
Ovary4 10 of 4 0.30None
Testis3 10 of 4 0.30None
Male accessory glands89 44 of 4 6.30Up
Virgin spermatheca15 52 of 4 1.06None
Mated spermatheca12 52 of 4 0.84None
Adult carcass21 52 of 4 1.50None
Larval CNS1 10 of 4 0.10None
Larval Salivary gland5 30 of 4 0.40None
Larval midgut14 40 of 4 1.01None
Larval tubule0 00 of 4 0.00None
Larval hindgut0 00 of 4 0.04None
Larval fat body1 00 of 4 0.10None
Larval trachea1 10 of 4 0.10None
Larval carcass1 00 of 4 0.08None
S2 cells (growing)0 00 of 4 0.06None
Whole fly14 62 of 4

Looking for FBgn0014396. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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