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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014411 through 18771 annotations produced 1 hits



CG14804 (Vps26):

Annotation Number : CG14804
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014411
Gbrowse : chrX:1767895-1770514 (+) // 100.0 //
Probeset : 1630839_at
Accessions : protein= NP_569952;, nucleotide= NM_130596;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotati
FlyMine data for FBgn0014411.
TRiP has 1 RNAi stocks for FBgn0014411 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014411 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain404 ± 74 of 4 1.10None
Head384 ± 294 of 4 1.10None
Eye342 ± 74 of 4 0.95None
Thoracicoabdominal ganglion437 ± 84 of 4 1.20None
Salivary gland345 ± 114 of 4 0.96None
Crop424 ± 214 of 4 1.20None
Midgut217 ± 84 of 4 0.60Down
Tubule400 ± 104 of 4 1.10Up
Hindgut362 ± 104 of 4 1.00None
Heart729 ± 244 of 4 2.03Up
Fat body316 ± 104 of 4 0.88None
Ovary650 ± 54 of 4 1.80Up
Testis151 ± 34 of 4 0.40Down
Male accessory glands338 ± 84 of 4 0.90None
Virgin spermatheca406 ± 244 of 4 1.13None
Mated spermatheca416 ± 264 of 4 1.16None
Adult carcass245 ± 114 of 4 0.70Down
Larval CNS557 ± 434 of 4 1.55Up
Larval Salivary gland614 ± 124 of 4 1.71Up
Larval midgut283 ± 94 of 4 0.79None
Larval tubule563 ± 244 of 4 1.60Up
Larval hindgut488 ± 134 of 4 1.36Up
Larval fat body410 ± 274 of 4 1.10None
Larval trachea480 ± 234 of 4 1.34Up
Larval carcass284 ± 114 of 4 0.79None
S2 cells (growing)534 ± 374 of 4 1.48Up
Whole fly360 ± 314 of 4

Looking for FBgn0014411. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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