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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014417 through 18771 annotations produced 1 hits



(CG13397):

Annotation Number : CG13397
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014417
Gbrowse : chr2L:8409045-8411868 (-) // 100.0 //
Probeset : 1634468_at
Accessions : protein= NP_652045;, nucleotide= NM_143788;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004561 // alpha-N-acetylglucosaminidase activ
FlyMine data for FBgn0014417.
Homophila reports that CG13397 is a close match (5e-141) to human gene NAGLU (NP_000254), a gene associated with Sanfilippo syndrome, type B, 252920 (3).
BioGrid reports that CG13397 interacts with CG2371 .
VDRC has 1 RNAi stocks for FBgn0014417 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 24 of 4 0.60None
Head81 ± 24 of 4 0.80None
Eye32 ± 34 of 4 0.30Down
Thoracicoabdominal ganglion28 ± 14 of 4 0.30Down
Salivary gland52 ± 84 of 4 0.49Down
Crop13 ± 14 of 4 0.10Down
Midgut15 ± 14 of 4 0.10Down
Tubule89 ± 44 of 4 0.80Down
Hindgut82 ± 24 of 4 0.80None
Heart61 ± 14 of 4 0.57None
Fat body164 ± 64 of 4 1.51Up
Ovary200 ± 54 of 4 1.80Up
Testis18 ± 24 of 4 0.20Down
Male accessory glands38 ± 34 of 4 0.40Down
Virgin spermatheca192 ± 114 of 4 1.78Up
Mated spermatheca119 ± 114 of 4 1.10None
Adult carcass82 ± 84 of 4 0.80None
Larval CNS48 ± 34 of 4 0.45Down
Larval Salivary gland17 ± 14 of 4 0.16Down
Larval midgut7 ± 20 of 4 0.07Down
Larval tubule35 ± 64 of 4 0.30Down
Larval hindgut28 ± 34 of 4 0.26Down
Larval fat body249 ± 224 of 4 2.30Up
Larval trachea27 ± 34 of 4 0.26Down
Larval carcass24 ± 44 of 4 0.22Down
S2 cells (growing)163 ± 24 of 4 1.51Up
Whole fly108 ± 164 of 4

Looking for FBgn0014417. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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