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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014857 through 18771 annotations produced 1 hits



histone H3.3 variant (His3.3A):

Annotation Number : CG5825
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014857
Gbrowse : chr2L:5055057-5056000 (+) // 100.0 //
Probeset : 1627685_a_at
Accessions : protein= NP_511095; /// NP_523479; /// NP_723056; /// NP_727314; /// NP_788892;, nucleotide= NM_078540; /// NM_078755; /// NM_164624; /// NM_167180; /// NM_176719;
Pathway : 0000786 // nucleosome // inferred from sequence or structural similarity /// 0000786 // nucleosome // inferred from elec
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0014857.
BioGrid reports that CG5825 interacts with CG7755 .
VDRC has 2 RNAi stocks for FBgn0014857 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain636 84 of 4 1.10None
Head767 104 of 4 1.30Up
Eye1533 654 of 4 2.65Up
Thoracicoabdominal ganglion578 144 of 4 1.00None
Salivary gland1907 624 of 4 3.30Up
Crop504 164 of 4 0.90None
Midgut1499 294 of 4 2.60Up
Tubule135 34 of 4 0.20Down
Hindgut786 404 of 4 1.40Up
Heart711 414 of 4 1.23None
Fat body607 704 of 4 1.05None
Ovary579 94 of 4 1.00None
Testis460 144 of 4 0.80None
Male accessory glands503 134 of 4 0.90None
Virgin spermatheca246 194 of 4 0.43Down
Mated spermatheca212 144 of 4 0.37Down
Adult carcass643 474 of 4 1.10None
Larval CNS1625 1534 of 4 2.81Up
Larval Salivary gland1122 994 of 4 1.94Up
Larval midgut636 154 of 4 1.10None
Larval tubule397 64 of 4 0.70Down
Larval hindgut470 124 of 4 0.81None
Larval fat body477 134 of 4 0.80None
Larval trachea767 314 of 4 1.33Up
Larval carcass445 224 of 4 0.77None
S2 cells (growing)1648 254 of 4 2.85Up
Whole fly577 504 of 4

Looking for FBgn0014857. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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