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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014865 through 18771 annotations produced 1 hits



Metchnikowin (Mtk):

Annotation Number : CG8175
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014865
Gbrowse : chr2R:11296350-11296621 (+) // 100.0 //
Probeset : 1627613_at
Accessions : protein= NP_523752;, nucleotide= NM_079028;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
FlyMine data for FBgn0014865.
BDGP gene expression has embryonic in situ data for Mtk: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0014865 available for purchase.
VDRC has 2 RNAi stocks for FBgn0014865 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain131 ± 154 of 4 0.30None
Head2910 ± 5294 of 4 5.80Up
Eye2410 ± 10424 of 4 4.79None
Thoracicoabdominal ganglion74 ± 214 of 4 0.10None
Salivary gland31 ± 42 of 4 0.06None
Crop112 ± 334 of 4 0.20None
Midgut10 ± 12 of 4 0.00None
Tubule109 ± 553 of 4 0.20Down
Hindgut103 ± 494 of 4 0.20None
Heart1140 ± 1134 of 4 2.26None
Fat body809 ± 2724 of 4 1.61None
Ovary5 ± 11 of 4 0.00None
Testis7 ± 11 of 4 0.00None
Male accessory glands11 ± 01 of 4 0.00None
Virgin spermatheca1773 ± 5954 of 4 3.52None
Mated spermatheca874 ± 2244 of 4 1.74None
Adult carcass1046 ± 2204 of 4 2.10None
Larval CNS4 ± 12 of 4 0.01None
Larval Salivary gland119 ± 563 of 4 0.24None
Larval midgut16 ± 42 of 4 0.03None
Larval tubule3909 ± 2664 of 4 7.80Up
Larval hindgut101 ± 224 of 4 0.20None
Larval fat body2849 ± 8714 of 4 5.70None
Larval trachea118 ± 1204 of 4 0.24None
Larval carcass89 ± 304 of 4 0.18None
S2 cells (growing)10 ± 03 of 4 0.02None
Whole fly503 ± 2834 of 4

Looking for FBgn0014865. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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