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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014870 through 18771 annotations produced 1 hits



P-element somatic inhibitor (Psi):

Annotation Number : CG8912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014870
Gbrowse : chr2R:12750469-12755218 (-) // 100.0 //
Probeset : 1634021_a_at
Accessions : protein= NP_477123; /// NP_725623; /// NP_995862;, nucleotide= NM_057775; /// NM_166200; /// NM_206140;
Pathway : via spliceosome // inferred from mutant phenotype /// 0006397 // mRNA processing // inferred from direct assay /// 0007
Interpro : via spliceosome // inferred from mutant phenotype /// 0048025 // negative regulation of nuclear mRNA splicing
FlyMine data for FBgn0014870.
BDGP gene expression has embryonic in situ data for Psi: 4 pix of staining in 1 body parts.
BioGrid reports that CG8912 interacts with CG8749 .
TRiP has 3 RNAi stocks for FBgn0014870 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain214 ± 74 of 4 6.20Up
Head53 ± 24 of 4 1.60Up
Eye51 ± 44 of 4 1.50Up
Thoracicoabdominal ganglion145 ± 54 of 4 4.20Up
Salivary gland45 ± 24 of 4 1.31None
Crop51 ± 64 of 4 1.50None
Midgut37 ± 04 of 4 1.10None
Tubule42 ± 24 of 4 1.20Up
Hindgut62 ± 44 of 4 1.80Up
Heart42 ± 44 of 4 1.24None
Fat body55 ± 34 of 4 1.62Up
Ovary50 ± 24 of 4 1.50Up
Testis16 ± 04 of 4 0.50Down
Male accessory glands76 ± 34 of 4 2.20Up
Virgin spermatheca34 ± 34 of 4 1.00None
Mated spermatheca53 ± 14 of 4 1.55Up
Adult carcass34 ± 44 of 4 1.00None
Larval CNS415 ± 424 of 412.05Up
Larval Salivary gland120 ± 64 of 4 3.51Up
Larval midgut49 ± 24 of 4 1.42Up
Larval tubule56 ± 24 of 4 1.60Up
Larval hindgut129 ± 104 of 4 3.77Up
Larval fat body48 ± 44 of 4 1.40Up
Larval trachea133 ± 354 of 4 3.87Up
Larval carcass98 ± 74 of 4 2.85Up
S2 cells (growing)108 ± 74 of 4 3.14Up
Whole fly34 ± 34 of 4

Looking for FBgn0014870. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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