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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014930 through 18771 annotations produced 1 hits



transcript C (CG2846):

Annotation Number : CG2846
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014930
Gbrowse : chr3R:3737738-3738999 (-) // 100.0 //
Probeset : 1631313_at
Accessions : protein= NP_649749;, nucleotide= NM_141492;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0014930.
TRiP has 1 RNAi stocks for FBgn0014930 available for purchase.
VDRC has 1 RNAi stocks for FBgn0014930 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain145 ± 94 of 4 0.90None
Head343 ± 144 of 4 2.20Up
Eye739 ± 234 of 4 4.69Up
Thoracicoabdominal ganglion167 ± 34 of 4 1.10None
Salivary gland1027 ± 844 of 4 6.51Up
Crop275 ± 24 of 4 1.70Up
Midgut552 ± 214 of 4 3.50Up
Tubule258 ± 114 of 4 1.60Up
Hindgut291 ± 64 of 4 1.80Up
Heart293 ± 34 of 4 1.86Up
Fat body364 ± 564 of 4 2.31Up
Ovary226 ± 154 of 4 1.40Up
Testis49 ± 24 of 4 0.30Down
Male accessory glands752 ± 324 of 4 4.80Up
Virgin spermatheca401 ± 154 of 4 2.54Up
Mated spermatheca417 ± 224 of 4 2.64Up
Adult carcass240 ± 114 of 4 1.50Up
Larval CNS250 ± 64 of 4 1.59Up
Larval Salivary gland382 ± 94 of 4 2.42Up
Larval midgut221 ± 174 of 4 1.40Up
Larval tubule146 ± 54 of 4 0.90None
Larval hindgut473 ± 384 of 4 3.00Up
Larval fat body158 ± 134 of 4 1.00None
Larval trachea188 ± 124 of 4 1.19None
Larval carcass234 ± 244 of 4 1.49Up
S2 cells (growing)221 ± 54 of 4 1.40Up
Whole fly157 ± 154 of 4

Looking for FBgn0014930. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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