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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0014931 through 18771 annotations produced 1 hits



chr3R:3739578-3742178 (+) // 100.0 // (transcript B):

Annotation Number : CG2678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627593_at
Accessions : protein= , nucleotide= NP_649750;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic
FlyMine data for full length.
Homophila reports that CG2678 is a close match (6e-14) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
BioGrid reports that CG2678 interacts with CG2678 CG3338 CG3879 CG4061 CG6117 CG7414 CG7867 CG8271 CG9412 CG9506 CG9986 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 03 of 4 0.10Down
Head15 24 of 4 0.20Down
Eye9 14 of 4 0.13Down
Thoracicoabdominal ganglion11 02 of 4 0.20Down
Salivary gland6 40 of 4 0.09Down
Crop23 14 of 4 0.30Down
Midgut15 12 of 4 0.20Down
Tubule4 10 of 4 0.10Down
Hindgut19 14 of 4 0.30Down
Heart21 34 of 4 0.30Down
Fat body68 94 of 4 0.97None
Ovary197 24 of 4 2.80Up
Testis6 00 of 4 0.10Down
Male accessory glands9 20 of 4 0.10Down
Virgin spermatheca71 24 of 4 1.01None
Mated spermatheca70 84 of 4 0.99None
Adult carcass23 21 of 4 0.30Down
Larval CNS9 34 of 4 0.14Down
Larval Salivary gland8 01 of 4 0.12Down
Larval midgut8 00 of 4 0.11Down
Larval tubule9 11 of 4 0.10Down
Larval hindgut30 24 of 4 0.43Down
Larval fat body67 74 of 4 0.90None
Larval trachea2 10 of 4 0.04Down
Larval carcass2 10 of 4 0.04Down
S2 cells (growing)130 64 of 4 1.84Up
Whole fly70 24 of 4

Looking for FBgn0014931. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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