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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0015000 through 18771 annotations produced 1 hits

type I Geranylgeranyl Transferase (betaggt-I):

Annotation Number : CG3469
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015000
Gbrowse : chr2L:4945597-4948321 (+) // 100.0 //
Probeset : 1623853_at
Accessions : protein= NP_525100;, nucleotide= NM_080361;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004661 // protein geranylgeranyltransferase ac
FlyMine data for FBgn0015000.
BioGrid reports that CG3469 interacts with CG9375 CG9375 CG9375 CG18085 CG2845 .
TRiP has 1 RNAi stocks for FBgn0015000 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015000 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 14 of 4 0.60Down
Head104 54 of 4 0.60Down
Eye71 24 of 4 0.43Down
Thoracicoabdominal ganglion91 44 of 4 0.50Down
Salivary gland498 194 of 4 2.98Up
Crop126 64 of 4 0.80Down
Midgut415 54 of 4 2.50Up
Tubule830 2564 of 4 5.00Up
Hindgut131 44 of 4 0.80Down
Heart100 54 of 4 0.60Down
Fat body79 54 of 4 0.48Down
Ovary247 64 of 4 1.50Up
Testis44 14 of 4 0.30Down
Male accessory glands294 64 of 4 1.80Up
Virgin spermatheca72 54 of 4 0.43Down
Mated spermatheca98 114 of 4 0.59Down
Adult carcass122 134 of 4 0.70Down
Larval CNS138 134 of 4 0.83None
Larval Salivary gland959 1094 of 4 5.73Up
Larval midgut334 114 of 4 2.00Up
Larval tubule532 304 of 4 3.20Up
Larval hindgut258 234 of 4 1.55Up
Larval fat body93 64 of 4 0.60Down
Larval trachea140 114 of 4 0.84None
Larval carcass124 54 of 4 0.74Down
S2 cells (growing)368 74 of 4 2.20Up
Whole fly167 104 of 4

Looking for FBgn0015000. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime