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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015001 through 18771 annotations produced 1 hits



trypsin iota (iotaTry):

Annotation Number : CG7754
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015001
Gbrowse : chr2R:7244226-7245052 (+) // 100.0 //
Probeset : 1632540_at
Accessions : protein= NP_523695;, nucleotide= NM_078971;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0015001.
BDGP gene expression has embryonic in situ data for iotaTry: 8 pix of staining in 1 body parts.
Homophila reports that CG7754 is a close match (3e-12) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 2 RNAi stocks for FBgn0015001 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head6 00 of 4 0.10Down
Eye3 00 of 4 0.03Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland9 10 of 4 0.09Down
Crop7 00 of 4 0.10Down
Midgut1651 894 of 414.60Up
Tubule9 11 of 4 0.10Down
Hindgut75 74 of 4 0.70None
Heart1 00 of 4 0.01Down
Fat body7 00 of 4 0.06Down
Ovary4 00 of 4 0.00Down
Testis3 11 of 4 0.00Down
Male accessory glands5 20 of 4 0.00Down
Virgin spermatheca5 11 of 4 0.05Down
Mated spermatheca3 00 of 4 0.03Down
Adult carcass4 00 of 4 0.00Down
Larval CNS2 00 of 4 0.02Down
Larval Salivary gland5 10 of 4 0.05Down
Larval midgut1187 304 of 410.48Up
Larval tubule4 10 of 4 0.00Down
Larval hindgut31 34 of 4 0.27Down
Larval fat body10 21 of 4 0.10Down
Larval trachea2 10 of 4 0.02Down
Larval carcass4 10 of 4 0.04Down
S2 cells (growing)3 00 of 4 0.03Down
Whole fly113 194 of 4

Looking for FBgn0015001. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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