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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015031 through 18771 annotations produced 1 hits



cyclope (cype):

Annotation Number : CG14028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015031
Gbrowse : chr2L:5327240-5328000 (+) // 100.0 //
Probeset : 1638416_at
Accessions : protein= NP_536787;, nucleotide= NM_080526;
Pathway : cytochrome c to oxygen // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferre
Interpro : 0005751 // mitochondrial respiratory chain complex IV // inferred from sequence or structural similarity /// 0005811 //
FlyMine data for FBgn0015031.
BioGrid reports that CG14028 interacts with CG5717 CG9885 CG4920 .
TRiP has 1 RNAi stocks for FBgn0015031 available for purchase.
VDRC has 4 RNAi stocks for FBgn0015031 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2169 274 of 4 0.90None
Head2886 994 of 4 1.20Up
Eye2972 624 of 4 1.27Up
Thoracicoabdominal ganglion2996 1244 of 4 1.30Up
Salivary gland5143 1524 of 4 2.20Up
Crop3431 2264 of 4 1.50Up
Midgut2819 844 of 4 1.20None
Tubule3624 404 of 4 1.60Up
Hindgut3581 1234 of 4 1.50Up
Heart3984 1694 of 4 1.71Up
Fat body3604 2504 of 4 1.54Up
Ovary1289 534 of 4 0.60Down
Testis507 314 of 4 0.20Down
Male accessory glands1859 564 of 4 0.80None
Virgin spermatheca4700 1434 of 4 2.01Up
Mated spermatheca4329 2054 of 4 1.85Up
Adult carcass4370 2864 of 4 1.90Up
Larval CNS1721 754 of 4 0.74Down
Larval Salivary gland2692 774 of 4 1.15None
Larval midgut3272 444 of 4 1.40Up
Larval tubule2915 2824 of 4 1.20None
Larval hindgut3119 634 of 4 1.34Up
Larval fat body1049 1324 of 4 0.40Down
Larval trachea1886 804 of 4 0.81None
Larval carcass3510 2944 of 4 1.50Up
S2 cells (growing)978 194 of 4 0.42Down
Whole fly2334 1824 of 4

Looking for FBgn0015031. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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