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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015032 through 18771 annotations produced 1 hits



Cytochrome P450-4c3 (Cyp4c3):

Annotation Number : CG1438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015032
Gbrowse : chr3R:26719682-26726359 (+) // 100.0 //
Probeset : 1636716_at
Accessions : protein= NP_524598;, nucleotide= NM_079859;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0015032.
Homophila reports that CG1438 is a close match (4e-13) to human gene CYP2C;CYP2C19 (NP_000760), a gene associated with Clopidogrel, impaired responsiveness to (3);Mephenytoin poor metabolizer (3);Opremazole poor metabolizer (3);Proguanil poor metabolizer (3).
VDRC has 2 RNAi stocks for FBgn0015032 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30Down
Head31 24 of 4 2.80Up
Eye69 44 of 4 6.11Up
Thoracicoabdominal ganglion7 10 of 4 0.60None
Salivary gland5 00 of 4 0.51Down
Crop107 84 of 4 9.50Up
Midgut4 10 of 4 0.40Down
Tubule3 00 of 4 0.30Down
Hindgut82 44 of 4 7.30Up
Heart2 20 of 4 0.24Down
Fat body10 40 of 4 0.92None
Ovary0 00 of 4 0.10Down
Testis14 21 of 4 1.30None
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca4 20 of 4 0.43Down
Mated spermatheca7 30 of 4 0.63None
Adult carcass10 20 of 4 0.90None
Larval CNS1 10 of 4 0.14Down
Larval Salivary gland7 20 of 4 0.66None
Larval midgut5 20 of 4 0.48None
Larval tubule6 20 of 4 0.50None
Larval hindgut83 94 of 4 7.35Up
Larval fat body7 20 of 4 0.60None
Larval trachea62 194 of 4 5.55Up
Larval carcass96 243 of 4 8.56Up
S2 cells (growing)1 00 of 4 0.11Down
Whole fly11 10 of 4

Looking for FBgn0015032. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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