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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015035 through 18771 annotations produced 1 hits



Cytochrome P450-4e3 (Cyp4e3):

Annotation Number : CG4105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015035
Gbrowse : chr2L:9748011-9750020 (-) // 100.0 //
Probeset : 1623068_at
Accessions : protein= NP_523527;, nucleotide= NM_078803;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0015035.
Homophila reports that CG4105 is a close match (3e-11) to human gene CYP11A;P450SCC (NP_001093243), a gene associated with Adrenal insufficiency, congenital with or without 46, XY sex reversal (3);Lipoid congenital adrenal hyperplasia, 201710 (3).
VDRC has 5 RNAi stocks for FBgn0015035 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head377 ± 324 of 4 4.70Up
Eye406 ± 1364 of 4 5.03None
Thoracicoabdominal ganglion4 ± 20 of 4 0.10Down
Salivary gland10 ± 50 of 4 0.12Down
Crop129 ± 234 of 4 1.60None
Midgut22 ± 10 of 4 0.30None
Tubule825 ± 3004 of 410.20Up
Hindgut40 ± 53 of 4 0.50None
Heart192 ± 664 of 4 2.38None
Fat body720 ± 4384 of 4 8.91None
Ovary2 ± 10 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands182 ± 184 of 4 2.30Up
Virgin spermatheca142 ± 234 of 4 1.76None
Mated spermatheca41 ± 64 of 4 0.51None
Adult carcass458 ± 524 of 4 5.70Up
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland9 ± 20 of 4 0.12Down
Larval midgut20 ± 20 of 4 0.25None
Larval tubule47 ± 104 of 4 0.60None
Larval hindgut14 ± 20 of 4 0.18None
Larval fat body131 ± 164 of 4 1.60None
Larval trachea20 ± 133 of 4 0.26None
Larval carcass272 ± 474 of 4 3.38Up
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly80 ± 214 of 4

Looking for FBgn0015035. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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