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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015036 through 18771 annotations produced 1 hits



transcription unit I (Cyp4ae1):

Annotation Number : CG10755
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015036
Gbrowse : chrX:2072916-2075034 (+) // 100.0 //
Probeset : 1640667_at
Accessions : protein= NP_525044;, nucleotide= NM_080305;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0015036.
BDGP gene expression has embryonic in situ data for Cyp4ae1: 4 pix of staining in 1 body parts.
Homophila reports that CG10755 is a close match (3e-11) to human gene CYP2C;CYP2C19 (NP_000760), a gene associated with Clopidogrel, impaired responsiveness to (3);Mephenytoin poor metabolizer (3);Opremazole poor metabolizer (3);Proguanil poor metabolizer (3).
VDRC has 1 RNAi stocks for FBgn0015036 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 14 of 4 1.00None
Head25 ± 03 of 4 0.90None
Eye25 ± 24 of 4 0.94None
Thoracicoabdominal ganglion35 ± 04 of 4 1.30None
Salivary gland29 ± 42 of 4 1.08None
Crop13 ± 22 of 4 0.50Down
Midgut257 ± 84 of 4 9.40Up
Tubule98 ± 144 of 4 3.60Up
Hindgut59 ± 24 of 4 2.20Up
Heart23 ± 24 of 4 0.85None
Fat body26 ± 71 of 4 0.98None
Ovary10 ± 02 of 4 0.40Down
Testis13 ± 13 of 4 0.50Down
Male accessory glands9 ± 30 of 4 0.40Down
Virgin spermatheca13 ± 11 of 4 0.48Down
Mated spermatheca9 ± 31 of 4 0.33Down
Adult carcass48 ± 44 of 4 1.80Up
Larval CNS9 ± 10 of 4 0.34Down
Larval Salivary gland13 ± 10 of 4 0.48Down
Larval midgut52 ± 23 of 4 1.93Up
Larval tubule18 ± 12 of 4 0.70None
Larval hindgut31 ± 34 of 4 1.13None
Larval fat body12 ± 20 of 4 0.50Down
Larval trachea2 ± 30 of 4 0.11Down
Larval carcass18 ± 12 of 4 0.67None
S2 cells (growing)4 ± 10 of 4 0.16Down
Whole fly27 ± 34 of 4

Looking for FBgn0015036. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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