FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0015039 through 18771 annotations produced 1 hits

fly plexin a (Cyp9b2):

Annotation Number : CG4486
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015039
Gbrowse : chr2R:3017773-3019640 (-) // 100.0 //
Probeset : 1635008_at
Accessions : protein= NP_523646;, nucleotide= NM_078922;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0015039.
BDGP gene expression has embryonic in situ data for Cyp9b2: 11 pix of staining in 3 body parts.
Homophila reports that CG4486 is a close match (9e-12) to human gene CYP17;CYP17A1;P450C17 (NP_000093), a gene associated with 17,20-lyase deficiency, isolated, 202110 (3);17-alpha-hydroxylase/17,20-lyase deficiency, 202110 (3).
VDRC has 1 RNAi stocks for FBgn0015039 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	35 ± 2	4 of 4	0.10	Down
Head	954 ± 30	4 of 4	2.60	Up
Eye	284 ± 43	4 of 4	0.79	None
Thoracicoabdominal ganglion	33 ± 1	4 of 4	0.10	Down
Salivary gland	275 ± 38	4 of 4	0.76	None
Crop	4104 ± 240	4 of 4	11.40	Up
Midgut	1430 ± 19	4 of 4	4.00	Up
Tubule	479 ± 46	4 of 4	1.30	Up
Hindgut	1347 ± 33	4 of 4	3.70	Up
Heart	249 ± 16	4 of 4	0.69	Down
Fat body	455 ± 48	4 of 4	1.26	Up
Ovary	37 ± 2	4 of 4	0.10	Down
Testis	5 ± 0	0 of 4	0.00	Down
Male accessory glands	53 ± 5	4 of 4	0.10	Down
Virgin spermatheca	543 ± 70	4 of 4	1.50	None
Mated spermatheca	351 ± 31	4 of 4	0.97	None
Adult carcass	973 ± 47	4 of 4	2.70	Up
Larval CNS	7 ± 1	4 of 4	0.02	Down
Larval Salivary gland	106 ± 5	4 of 4	0.29	Down
Larval midgut	1670 ± 111	4 of 4	4.63	Up
Larval tubule	2148 ± 142	4 of 4	5.90	Up
Larval hindgut	510 ± 33	4 of 4	1.41	Up
Larval fat body	1031 ± 254	4 of 4	2.90	None
Larval trachea	25 ± 8	4 of 4	0.07	Down
Larval carcass	59 ± 2	4 of 4	0.16	Down
S2 cells (growing)	5 ± 1	2 of 4	0.02	Down
Whole fly	361 ± 16	4 of 4

Looking for FBgn0015039. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720