FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0015221 through 18771 annotations produced 1 hits

Ferritin (Fer2LCH):

Annotation Number : CG1469
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015221
Gbrowse : chr3R:26213553-26216306 (+) // 100.0 //
Probeset : 1636186_s_at
Accessions : protein= NP_524802; /// NP_733362; /// NP_733363;, nucleotide= NM_080063; /// NM_170483; /// NM_170484;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay /// 0008043 // intracellular ferritin complex // inferred from
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct as
FlyMine data for FBgn0015221.
BDGP gene expression has embryonic in situ data for Fer2LCH: 18 pix of staining in 12 body parts.
BioGrid reports that CG1469 interacts with CG2216 CG5700 CG6544 CG8235 CG8933 CG3340 .
VDRC has 2 RNAi stocks for FBgn0015221 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2438 ± 14	4 of 4	1.00	None
Head	3010 ± 84	4 of 4	1.30	Up
Eye	4363 ± 83	4 of 4	1.86	Up
Thoracicoabdominal ganglion	3016 ± 50	4 of 4	1.30	Up
Salivary gland	3318 ± 117	4 of 4	1.42	Up
Crop	2310 ± 43	4 of 4	1.00	None
Midgut	5072 ± 38	4 of 4	2.20	Up
Tubule	4347 ± 53	4 of 4	1.90	Up
Hindgut	2889 ± 40	4 of 4	1.20	Up
Heart	6964 ± 443	4 of 4	2.97	Up
Fat body	4851 ± 586	4 of 4	2.07	Up
Ovary	1411 ± 11	4 of 4	0.60	Down
Testis	1177 ± 34	4 of 4	0.50	Down
Male accessory glands	2434 ± 37	4 of 4	1.00	None
Virgin spermatheca	4927 ± 180	4 of 4	2.10	Up
Mated spermatheca	4609 ± 29	4 of 4	1.97	Up
Adult carcass	4625 ± 160	4 of 4	2.00	Up
Larval CNS	1957 ± 137	4 of 4	0.84	Down
Larval Salivary gland	1535 ± 51	4 of 4	0.66	Down
Larval midgut	5224 ± 191	4 of 4	2.23	Up
Larval tubule	4048 ± 96	4 of 4	1.70	Up
Larval hindgut	2234 ± 87	4 of 4	0.95	None
Larval fat body	3266 ± 338	4 of 4	1.40	None
Larval trachea	2197 ± 299	4 of 4	0.94	None
Larval carcass	1681 ± 143	4 of 4	0.72	Down
S2 cells (growing)	67 ± 3	4 of 4	0.03	Down
Whole fly	2342 ± 93	4 of 4

Looking for FBgn0015221. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720