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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015240 through 18771 annotations produced 1 hits



Hormone receptor-like in 96 (Hr96):

Annotation Number : CG11783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015240
Gbrowse : chr3R:20850960-20855075 (+) // 100.0 //
Probeset : 1639398_at
Accessions : protein= NP_524493;, nucleotide= NM_079769;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0015240.
Homophila reports that CG11783 is a close match (9e-11) to human gene PPARA;PPAR (NP_005027), a gene associated with {Hyperapobetalipoproteinemia, susceptibility to} (3).
BioGrid reports that CG11783 interacts with CG13032 CG5692 CG8266 CG9902 .
TRiP has 1 RNAi stocks for FBgn0015240 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015240 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain153 ± 34 of 4 1.30Up
Head79 ± 24 of 4 0.70Down
Eye91 ± 34 of 4 0.79Down
Thoracicoabdominal ganglion173 ± 114 of 4 1.50Up
Salivary gland116 ± 64 of 4 1.01None
Crop112 ± 84 of 4 1.00None
Midgut207 ± 54 of 4 1.80Up
Tubule173 ± 74 of 4 1.50Up
Hindgut138 ± 44 of 4 1.20Up
Heart73 ± 24 of 4 0.64Down
Fat body92 ± 44 of 4 0.80Down
Ovary223 ± 34 of 4 1.90Up
Testis75 ± 24 of 4 0.70Down
Male accessory glands114 ± 64 of 4 1.00None
Virgin spermatheca148 ± 124 of 4 1.29None
Mated spermatheca156 ± 74 of 4 1.36Up
Adult carcass57 ± 34 of 4 0.50Down
Larval CNS97 ± 104 of 4 0.85Down
Larval Salivary gland132 ± 104 of 4 1.15None
Larval midgut223 ± 74 of 4 1.94Up
Larval tubule103 ± 34 of 4 0.90None
Larval hindgut131 ± 54 of 4 1.14None
Larval fat body86 ± 44 of 4 0.80Down
Larval trachea108 ± 54 of 4 0.94None
Larval carcass77 ± 24 of 4 0.67Down
S2 cells (growing)89 ± 24 of 4 0.77Down
Whole fly115 ± 44 of 4

Looking for FBgn0015240. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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