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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015245 through 18771 annotations produced 1 hits



heat shock protein 60 kDa (Hsp60):

Annotation Number : CG12101
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015245
Gbrowse : chrX:11002505-11006341 (+) // 100.0 //
Probeset : 1641286_s_at
Accessions : protein= NP_511115; /// NP_727489;, nucleotide= NM_078560; /// NM_167266;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ele
FlyMine data for FBgn0015245.
BDGP gene expression has embryonic in situ data for Hsp60: 12 pix of staining in 16 body parts.
Homophila reports that CG12101 is a close match (0) to human gene HSP60;HSPD1;SPG13 (NP_955472), a gene associated with Leukodystrophy, hypomyelinating, autosomal recessive, 612233 (3);Spastic paraplegia-13, 605280 (3).
BioGrid reports that CG12101 interacts with CG33484 CG5352 .
TRiP has 1 RNAi stocks for FBgn0015245 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1702 ± 494 of 4 1.40Up
Head1144 ± 334 of 4 1.00None
Eye621 ± 244 of 4 0.52Down
Thoracicoabdominal ganglion2154 ± 304 of 4 1.80Up
Salivary gland401 ± 264 of 4 0.34Down
Crop727 ± 174 of 4 0.60Down
Midgut509 ± 224 of 4 0.40Down
Tubule1246 ± 704 of 4 1.00None
Hindgut678 ± 154 of 4 0.60Down
Heart1046 ± 514 of 4 0.88None
Fat body1165 ± 784 of 4 0.98None
Ovary1745 ± 504 of 4 1.50Up
Testis722 ± 214 of 4 0.60Down
Male accessory glands765 ± 834 of 4 0.60Down
Virgin spermatheca992 ± 754 of 4 0.83None
Mated spermatheca1246 ± 924 of 4 1.05None
Adult carcass889 ± 314 of 4 0.70Down
Larval CNS979 ± 734 of 4 0.82Down
Larval Salivary gland971 ± 564 of 4 0.82Down
Larval midgut489 ± 554 of 4 0.41Down
Larval tubule163 ± 64 of 4 0.10Down
Larval hindgut1173 ± 1394 of 4 0.99None
Larval fat body364 ± 324 of 4 0.30Down
Larval trachea1116 ± 2054 of 4 0.94None
Larval carcass766 ± 1094 of 4 0.64Down
S2 cells (growing)1113 ± 184 of 4 0.93None
Whole fly1191 ± 404 of 4

Looking for FBgn0015245. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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