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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015268 through 18771 annotations produced 1 hits



Nucleosome assembly protein 1 (Nap1):

Annotation Number : CG5330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015268
Gbrowse : chr2R:19792695-19794837 (-) // 100.0 //
Probeset : 1626785_at
Accessions : protein= NP_477128;, nucleotide= NM_057780;
Pathway : DNA-dependent // inferred from direct assay"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
FlyMine data for FBgn0015268.
BDGP gene expression has embryonic in situ data for Nap1: 41 pix of staining in 18 body parts.
TRiP has 2 RNAi stocks for FBgn0015268 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015268 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain744 ± 224 of 4 0.40Down
Head1281 ± 574 of 4 0.80Down
Eye2010 ± 364 of 4 1.18Up
Thoracicoabdominal ganglion766 ± 194 of 4 0.40Down
Salivary gland1472 ± 254 of 4 0.86Down
Crop1197 ± 354 of 4 0.70Down
Midgut844 ± 354 of 4 0.50Down
Tubule852 ± 314 of 4 0.50Down
Hindgut1365 ± 414 of 4 0.80Down
Heart1826 ± 824 of 4 1.07None
Fat body2228 ± 904 of 4 1.30Up
Ovary2046 ± 324 of 4 1.20Up
Testis232 ± 194 of 4 0.10Down
Male accessory glands1605 ± 1344 of 4 0.90None
Virgin spermatheca1003 ± 604 of 4 0.59Down
Mated spermatheca1197 ± 1004 of 4 0.70Down
Adult carcass1315 ± 504 of 4 0.80Down
Larval CNS1307 ± 484 of 4 0.77Down
Larval Salivary gland1451 ± 1014 of 4 0.85None
Larval midgut564 ± 234 of 4 0.33Down
Larval tubule418 ± 94 of 4 0.20Down
Larval hindgut1063 ± 324 of 4 0.62Down
Larval fat body641 ± 624 of 4 0.40Down
Larval trachea2333 ± 654 of 4 1.37Up
Larval carcass1182 ± 864 of 4 0.69Down
S2 cells (growing)1849 ± 494 of 4 1.08None
Whole fly1707 ± 644 of 4

Looking for FBgn0015268. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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