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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015270 through 18771 annotations produced 1 hits



lethal(3)88Ab (Orc2):

Annotation Number : CG3041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015270
Gbrowse : chr3R:9790638-9792803 (+) // 100.0 //
Probeset : 1635760_at
Accessions : protein= NP_731873;, nucleotide= NM_169563;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation /// 0000808 // origin recognition complex // inferred from el
FlyMine data for FBgn0015270.
BDGP gene expression has embryonic in situ data for Orc2: 15 pix of staining in 16 body parts.
BioGrid reports that CG3041 interacts with CG7285 .
VDRC has 5 RNAi stocks for FBgn0015270 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.10Down
Head6 ± 11 of 4 0.10Down
Eye3 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion8 ± 22 of 4 0.10Down
Salivary gland9 ± 40 of 4 0.10Down
Crop12 ± 13 of 4 0.10Down
Midgut17 ± 14 of 4 0.20Down
Tubule10 ± 12 of 4 0.10Down
Hindgut6 ± 13 of 4 0.10Down
Heart2 ± 00 of 4 0.03Down
Fat body11 ± 12 of 4 0.12Down
Ovary228 ± 54 of 4 2.50Up
Testis15 ± 14 of 4 0.20Down
Male accessory glands10 ± 22 of 4 0.10Down
Virgin spermatheca6 ± 11 of 4 0.07Down
Mated spermatheca10 ± 12 of 4 0.12Down
Adult carcass14 ± 43 of 4 0.20Down
Larval CNS86 ± 94 of 4 0.94None
Larval Salivary gland33 ± 34 of 4 0.36Down
Larval midgut13 ± 14 of 4 0.15Down
Larval tubule11 ± 24 of 4 0.10Down
Larval hindgut18 ± 24 of 4 0.20Down
Larval fat body12 ± 11 of 4 0.10Down
Larval trachea30 ± 44 of 4 0.33Down
Larval carcass17 ± 14 of 4 0.19Down
S2 cells (growing)63 ± 14 of 4 0.69Down
Whole fly92 ± 64 of 4

Looking for FBgn0015270. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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