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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0015282 through 18771 annotations produced 1 hits

26S proteasome subunit 4 ATPase (Pros26.4):

Annotation Number : CG5289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015282
Gbrowse : chr3R:19755555-19757247 (-) // 100.0 //
Probeset : 1630788_at
Accessions : protein= NP_524469;, nucleotide= NM_079745;
Pathway : "0000502 // proteasome complex // non-traceable author statement /// 0000502 // proteasome complex // inferred from elec
Interpro : base subcomplex // inferred from sequence or structural similarity"
FlyMine data for FBgn0015282.
BDGP gene expression has embryonic in situ data for Pros26.4: 4 pix of staining in 1 body parts.
Homophila reports that CG5289 is a close match (8e-13) to human gene BCS1L;BJS;FLNMS;GRACILE;PTD (NP_004319), a gene associated with Bjornstad syndrome, 262000 (3);GRACILE syndrome, 603358 (3);Leigh syndrome, 256000 (3);Mitochondrial complex III deficiency, 124000 (3).
BioGrid reports that CG5289 interacts with CG9588 .
TRiP has 1 RNAi stocks for FBgn0015282 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015282 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 94 of 4 0.50Down
Head248 194 of 4 0.60Down
Eye249 34 of 4 0.56Down
Thoracicoabdominal ganglion195 64 of 4 0.40Down
Salivary gland525 124 of 4 1.19Up
Crop456 84 of 4 1.00None
Midgut330 74 of 4 0.70Down
Tubule348 324 of 4 0.80Down
Hindgut352 84 of 4 0.80Down
Heart824 354 of 4 1.86Up
Fat body644 744 of 4 1.46Up
Ovary568 74 of 4 1.30Up
Testis334 154 of 4 0.80Down
Male accessory glands332 264 of 4 0.80Down
Virgin spermatheca298 154 of 4 0.67Down
Mated spermatheca294 244 of 4 0.67Down
Adult carcass552 134 of 4 1.20Up
Larval CNS489 274 of 4 1.11Up
Larval Salivary gland761 194 of 4 1.72Up
Larval midgut697 704 of 4 1.58Up
Larval tubule1267 144 of 4 2.90Up
Larval hindgut637 424 of 4 1.44Up
Larval fat body603 544 of 4 1.40None
Larval trachea506 604 of 4 1.15None
Larval carcass1149 1344 of 4 2.60Up
S2 cells (growing)482 34 of 4 1.09Up
Whole fly442 94 of 4

Looking for FBgn0015282. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime