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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015283 through 18771 annotations produced 1 hits



chr3L:21530099-21531683 (+) // 100.0 // (54 kda mu particle subunit of 26S protease):

Annotation Number : CG7619
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635974_at
Accessions : protein= , nucleotide= NP_524204;
Pathway : 0006281 // DNA repair // inferred from electronic annotation /// 0006508 // proteolysis // inferred from direct assay //
Interpro : "0000502 // proteasome complex // non-traceable author statement /// 0000502 // proteasome complex // inferred from elec
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain464 44 of 4 0.60Down
Head465 34 of 4 0.60Down
Eye494 184 of 4 0.64Down
Thoracicoabdominal ganglion451 124 of 4 0.60Down
Salivary gland647 194 of 4 0.84Down
Crop690 84 of 4 0.90Down
Midgut533 144 of 4 0.70Down
Tubule712 574 of 4 0.90None
Hindgut531 74 of 4 0.70Down
Heart1227 614 of 4 1.59Up
Fat body1071 814 of 4 1.38Up
Ovary1009 134 of 4 1.30Up
Testis886 314 of 4 1.10Up
Male accessory glands434 284 of 4 0.60Down
Virgin spermatheca460 144 of 4 0.59Down
Mated spermatheca468 244 of 4 0.61Down
Adult carcass979 274 of 4 1.30Up
Larval CNS693 344 of 4 0.89Down
Larval Salivary gland897 744 of 4 1.16None
Larval midgut888 924 of 4 1.15None
Larval tubule1937 334 of 4 2.50Up
Larval hindgut887 614 of 4 1.15None
Larval fat body1243 954 of 4 1.60Up
Larval trachea644 684 of 4 0.83Down
Larval carcass1093 1394 of 4 1.41None
S2 cells (growing)569 124 of 4 0.74Down
Whole fly774 124 of 4

Looking for FBgn0015283. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime