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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015286 through 18771 annotations produced 1 hits



anon-fast-evolving-1H4 (Rala):

Annotation Number : CG2849
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015286
Gbrowse : chrX:3599016-3613665 (-) // 91.42 //
Probeset : 1640377_s_at
Accessions : protein= NP_525063; /// NP_726881; /// NP_726882;, nucleotide= NM_080324; /// NM_166985; /// NM_166986;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from direct a
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0015286.
BDGP gene expression has embryonic in situ data for Rala: 14 pix of staining in 1 body parts.
Homophila reports that CG2849 is a close match (2e-15) to human gene RAC2 (NP_002863), a gene associated with Neutrophil immunodeficiency syndrome, 608203 (3).
BioGrid reports that CG2849 interacts with CG4878 CG6407 CG5680 CG4353 .
TRiP has 2 RNAi stocks for FBgn0015286 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015286 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain294 ± 194 of 4 0.70Down
Head294 ± 234 of 4 0.70Down
Eye152 ± 74 of 4 0.35Down
Thoracicoabdominal ganglion269 ± 134 of 4 0.60Down
Salivary gland444 ± 414 of 4 1.01None
Crop778 ± 114 of 4 1.80Up
Midgut947 ± 404 of 4 2.20Up
Tubule410 ± 154 of 4 0.90None
Hindgut632 ± 164 of 4 1.40Up
Heart317 ± 254 of 4 0.72Down
Fat body507 ± 594 of 4 1.15None
Ovary965 ± 334 of 4 2.20Up
Testis93 ± 34 of 4 0.20Down
Male accessory glands350 ± 54 of 4 0.80None
Virgin spermatheca562 ± 264 of 4 1.28Up
Mated spermatheca595 ± 324 of 4 1.35Up
Adult carcass266 ± 174 of 4 0.60Down
Larval CNS587 ± 374 of 4 1.34Up
Larval Salivary gland231 ± 94 of 4 0.53Down
Larval midgut1340 ± 554 of 4 3.05Up
Larval tubule862 ± 404 of 4 2.00Up
Larval hindgut1102 ± 224 of 4 2.51Up
Larval fat body770 ± 804 of 4 1.80Up
Larval trachea246 ± 94 of 4 0.56Down
Larval carcass386 ± 204 of 4 0.88None
S2 cells (growing)593 ± 334 of 4 1.35Up
Whole fly439 ± 294 of 4

Looking for FBgn0015286. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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