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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015299 through 18771 annotations produced 1 hits



Single stranded-binding protein c31A (Ssb-c31a):

Annotation Number : CG8396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015299
Gbrowse : chr2L:8211362-8211930 (+) // 100.0 //
Probeset : 1639981_at
Accessions : protein= NP_477136;, nucleotide= NM_057788;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005667 // transcription factor complex // inferred from s
FlyMine data for FBgn0015299.
TRiP has 1 RNAi stocks for FBgn0015299 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015299 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain397 94 of 4 0.80Down
Head260 94 of 4 0.50Down
Eye255 74 of 4 0.54Down
Thoracicoabdominal ganglion473 154 of 4 1.00None
Salivary gland188 124 of 4 0.40Down
Crop152 84 of 4 0.30Down
Midgut328 64 of 4 0.70Down
Tubule144 114 of 4 0.30Down
Hindgut215 54 of 4 0.50Down
Heart221 124 of 4 0.47Down
Fat body219 264 of 4 0.46Down
Ovary705 244 of 4 1.50Up
Testis275 24 of 4 0.60Down
Male accessory glands263 94 of 4 0.60Down
Virgin spermatheca362 234 of 4 0.76Down
Mated spermatheca330 194 of 4 0.70Down
Adult carcass172 114 of 4 0.40Down
Larval CNS870 294 of 4 1.83Up
Larval Salivary gland320 114 of 4 0.68Down
Larval midgut232 134 of 4 0.49Down
Larval tubule301 54 of 4 0.60Down
Larval hindgut216 34 of 4 0.46Down
Larval fat body268 104 of 4 0.60Down
Larval trachea479 304 of 4 1.01None
Larval carcass225 104 of 4 0.47Down
S2 cells (growing)733 94 of 4 1.54Up
Whole fly475 84 of 4

Looking for FBgn0015299. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime