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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0015300 through 18771 annotations produced 1 hits


chr2R:20386765-20387754 (-) // 100.0 // (Su(Ste)-like):

Annotation Number : CG13591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1641012_at
Accessions : protein= , nucleotide= NP_523848;
Pathway : 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphoryla
Interpro : 0005956 // protein kinase CK2 complex // inferred from electronic annotation
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland3 ± 20 of 4 0.09Down
Crop5 ± 10 of 4 0.20Down
Midgut3 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.07Down
Fat body5 ± 40 of 4 0.16Down
Ovary1 ± 00 of 4 0.00Down
Testis418 ± 294 of 411.60Up
Male accessory glands12 ± 20 of 4 0.40Down
Virgin spermatheca3 ± 00 of 4 0.09Down
Mated spermatheca4 ± 10 of 4 0.13Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS3 ± 10 of 4 0.09Down
Larval Salivary gland2 ± 00 of 4 0.06Down
Larval midgut2 ± 10 of 4 0.07Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.07Down
Larval fat body76 ± 302 of 4 2.10None
Larval trachea4 ± 21 of 4 0.11Down
Larval carcass2 ± 00 of 4 0.07Down
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly36 ± 43 of 4

Looking for FBgn0015300. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime