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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015316 through 18771 annotations produced 1 hits



Trypsin 29F (Try29F):

Annotation Number : CG9564
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015316
Gbrowse : chr2L:8998536-8999457 (+) // 100.0 //
Probeset : 1636611_at
Accessions : protein= NP_523518;, nucleotide= NM_078794;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0015316.
Homophila reports that CG9564 is a close match (4e-14) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
VDRC has 3 RNAi stocks for FBgn0015316 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 24 of 4 1.00None
Head17 ± 01 of 4 0.40None
Eye16 ± 14 of 4 0.34None
Thoracicoabdominal ganglion43 ± 14 of 4 0.90None
Salivary gland11 ± 41 of 4 0.23None
Crop7 ± 00 of 4 0.10None
Midgut542 ± 404 of 410.80Up
Tubule8 ± 40 of 4 0.20Down
Hindgut274 ± 704 of 4 5.50Up
Heart2 ± 10 of 4 0.05None
Fat body3 ± 20 of 4 0.07None
Ovary3 ± 10 of 4 0.10None
Testis29 ± 24 of 4 0.60None
Male accessory glands3 ± 10 of 4 0.10None
Virgin spermatheca2 ± 10 of 4 0.05None
Mated spermatheca5 ± 10 of 4 0.10None
Adult carcass4 ± 20 of 4 0.10None
Larval CNS22 ± 34 of 4 0.45None
Larval Salivary gland3 ± 10 of 4 0.06None
Larval midgut115 ± 414 of 4 2.29None
Larval tubule5 ± 10 of 4 0.10None
Larval hindgut11 ± 23 of 4 0.22None
Larval fat body10 ± 21 of 4 0.20None
Larval trachea3 ± 20 of 4 0.07None
Larval carcass1 ± 00 of 4 0.03None
S2 cells (growing)12 ± 13 of 4 0.25None
Whole fly50 ± 153 of 4

Looking for FBgn0015316. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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