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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015323 through 18771 annotations produced 1 hits



VAChT (VAChT):

Annotation Number : CG32848
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015323
Gbrowse : chr3R:14531173-14544638 (+) // 100.0 //
Probeset : 1636264_at
Accessions : protein= NP_477138;, nucleotide= NM_057790;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005277 // acetylcholine transmembrane transporter activity // non-traceable author statement /// 0005278 // acetylcholi
FlyMine data for FBgn0015323.
TRiP has 1 RNAi stocks for FBgn0015323 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015323 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1176 ± 564 of 439.10Up
Head230 ± 134 of 4 7.70Up
Eye40 ± 74 of 4 1.34None
Thoracicoabdominal ganglion867 ± 344 of 428.90Up
Salivary gland3 ± 10 of 4 0.13Down
Crop1 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.05Down
Fat body7 ± 30 of 4 0.24Down
Ovary0 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands1 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.07Down
Mated spermatheca2 ± 10 of 4 0.07Down
Adult carcass23 ± 53 of 4 0.80None
Larval CNS415 ± 494 of 413.84Up
Larval Salivary gland1 ± 00 of 4 0.06Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea2 ± 10 of 4 0.07Down
Larval carcass5 ± 10 of 4 0.17Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly30 ± 24 of 4

Looking for FBgn0015323. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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