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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015324 through 18771 annotations produced 1 hits



E subunit (Vha26):

Annotation Number : CG1088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015324
Gbrowse : chr3R:1417452-1420429 (+) // 100.0 //
Probeset : 1629065_s_at
Accessions : protein= NP_524237; /// NP_730957;, nucleotide= NM_079513; /// NM_169073;
Pathway : "0000221 // vacuolar proton-transporting V-type ATPase
Interpro : V1 domain // inferred from sequence or structural similarity /// 0000221 // vacuolar proton-transporting V-type ATPase
FlyMine data for FBgn0015324.
BDGP gene expression has embryonic in situ data for Vha26: 18 pix of staining in 8 body parts.
BioGrid reports that CG1088 interacts with CG17332 CG6213 CG11176 CG11624 CG16826 CG18584 CG32036 CG3480 CG17436 CG4800 CG7001 CG7425 CG8280 CG8947 .
TRiP has 1 RNAi stocks for FBgn0015324 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015324 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2409 ± 464 of 4 1.20Up
Head2099 ± 604 of 4 1.10None
Eye1648 ± 814 of 4 0.83Down
Thoracicoabdominal ganglion2972 ± 1234 of 4 1.50Up
Salivary gland11317 ± 3444 of 4 5.73Up
Crop2093 ± 374 of 4 1.10None
Midgut4330 ± 954 of 4 2.20Up
Tubule6448 ± 1404 of 4 3.30Up
Hindgut5075 ± 1144 of 4 2.60Up
Heart1734 ± 444 of 4 0.88Down
Fat body1276 ± 1234 of 4 0.65Down
Ovary1498 ± 344 of 4 0.80Down
Testis777 ± 264 of 4 0.40Down
Male accessory glands1730 ± 64 of 4 0.90Down
Virgin spermatheca1569 ± 334 of 4 0.79Down
Mated spermatheca1706 ± 774 of 4 0.86Down
Adult carcass1771 ± 284 of 4 0.90Down
Larval CNS1587 ± 694 of 4 0.80Down
Larval Salivary gland3937 ± 564 of 4 1.99Up
Larval midgut4646 ± 1284 of 4 2.35Up
Larval tubule3979 ± 874 of 4 2.00Up
Larval hindgut5110 ± 524 of 4 2.59Up
Larval fat body1624 ± 974 of 4 0.80Down
Larval trachea2608 ± 864 of 4 1.32Up
Larval carcass2754 ± 984 of 4 1.39Up
S2 cells (growing)1960 ± 174 of 4 0.99None
Whole fly1976 ± 324 of 4

Looking for FBgn0015324. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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