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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015336 through 18771 annotations produced 1 hits



(CG15865):

Annotation Number : CG15865
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015336
Gbrowse : chrX:16554925-16558488 (-) // 100.0 //
Probeset : 1634892_at
Accessions : protein= NP_573143;, nucleotide= NM_132915;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0015336.
BDGP gene expression has embryonic in situ data for CG15865: 4 pix of staining in 1 body parts.
BioGrid reports that CG15865 interacts with CG4818 CG8907 CG8927 .
VDRC has 2 RNAi stocks for FBgn0015336 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head3 ± 10 of 4 0.30Down
Eye3 ± 10 of 4 0.23Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland3 ± 00 of 4 0.22Down
Crop2 ± 10 of 4 0.10Down
Midgut131 ± 34 of 4 9.00Up
Tubule6 ± 10 of 4 0.50Down
Hindgut71 ± 54 of 4 4.90Up
Heart2 ± 10 of 4 0.19Down
Fat body1 ± 00 of 4 0.08Down
Ovary0 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.25Down
Mated spermatheca3 ± 10 of 4 0.21Down
Adult carcass5 ± 20 of 4 0.40Down
Larval CNS1 ± 10 of 4 0.08Down
Larval Salivary gland6 ± 10 of 4 0.47Down
Larval midgut34 ± 14 of 4 2.37Up
Larval tubule78 ± 174 of 4 5.40Up
Larval hindgut352 ± 354 of 424.18Up
Larval fat body3 ± 10 of 4 0.30Down
Larval trachea1 ± 10 of 4 0.11Down
Larval carcass4 ± 10 of 4 0.31Down
S2 cells (growing)2 ± 00 of 4 0.15Down
Whole fly14 ± 12 of 4

Looking for FBgn0015336. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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