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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015359 through 18771 annotations produced 1 hits



(CG2034):

Annotation Number : CG2034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015359
Gbrowse : chr3L:2257668-2258922 (+) // 100.0 //
Probeset : 1623633_at
Accessions : protein= NP_647704;, nucleotide= NM_139447;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0015359.
BioGrid reports that CG2034 interacts with CG6907 .
TRiP has 1 RNAi stocks for FBgn0015359 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015359 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 ± 34 of 4 0.40Down
Head114 ± 64 of 4 0.50Down
Eye96 ± 54 of 4 0.42Down
Thoracicoabdominal ganglion86 ± 54 of 4 0.40Down
Salivary gland77 ± 54 of 4 0.34Down
Crop122 ± 44 of 4 0.50Down
Midgut88 ± 34 of 4 0.40Down
Tubule119 ± 64 of 4 0.50Down
Hindgut85 ± 134 of 4 0.40Down
Heart153 ± 34 of 4 0.66Down
Fat body134 ± 174 of 4 0.58Down
Ovary392 ± 74 of 4 1.70Up
Testis671 ± 104 of 4 2.90Up
Male accessory glands268 ± 204 of 4 1.20None
Virgin spermatheca93 ± 24 of 4 0.40Down
Mated spermatheca99 ± 74 of 4 0.43Down
Adult carcass129 ± 74 of 4 0.60Down
Larval CNS203 ± 134 of 4 0.88Down
Larval Salivary gland175 ± 54 of 4 0.76Down
Larval midgut77 ± 04 of 4 0.34Down
Larval tubule279 ± 54 of 4 1.20Up
Larval hindgut102 ± 34 of 4 0.44Down
Larval fat body420 ± 164 of 4 1.80Up
Larval trachea183 ± 104 of 4 0.79Down
Larval carcass127 ± 64 of 4 0.55Down
S2 cells (growing)253 ± 64 of 4 1.10None
Whole fly231 ± 74 of 4

Looking for FBgn0015359. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime