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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015360 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3L:2258836-2262661 (-) // 100.0 //):

Annotation Number : CG32300
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1637482_at
Accessions : protein= EC:2.4.1.- /// EC:2.4.2.26, nucleotide=
Interpro : 0015012 // heparan sulfate proteoglycan biosynthetic process // inferred from direct assay /// 0015012 // heparan sulfat
Homophila reports that CG32300 is a close match (1e-21) to human gene GCNT2 (NP_663630), a gene associated with Adult i phenotype with congenital cataract, 110800 (3);Adult i phenotype without cataract, 110800 (3);[Blood group, Ii], 110800 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain148 ± 34 of 4 1.10None
Head118 ± 14 of 4 0.80Down
Eye128 ± 44 of 4 0.91None
Thoracicoabdominal ganglion157 ± 44 of 4 1.10Up
Salivary gland142 ± 94 of 4 1.02None
Crop117 ± 14 of 4 0.80Down
Midgut90 ± 14 of 4 0.60Down
Tubule232 ± 104 of 4 1.70Up
Hindgut91 ± 54 of 4 0.70Down
Heart62 ± 24 of 4 0.45Down
Fat body100 ± 84 of 4 0.72Down
Ovary340 ± 94 of 4 2.40Up
Testis43 ± 34 of 4 0.30Down
Male accessory glands53 ± 54 of 4 0.40Down
Virgin spermatheca99 ± 74 of 4 0.71Down
Mated spermatheca100 ± 24 of 4 0.71Down
Adult carcass82 ± 74 of 4 0.60Down
Larval CNS141 ± 144 of 4 1.01None
Larval Salivary gland167 ± 134 of 4 1.20None
Larval midgut117 ± 84 of 4 0.84None
Larval tubule218 ± 84 of 4 1.60Up
Larval hindgut159 ± 24 of 4 1.14Up
Larval fat body143 ± 44 of 4 1.00None
Larval trachea106 ± 84 of 4 0.76Down
Larval carcass135 ± 44 of 4 0.97None
S2 cells (growing)135 ± 34 of 4 0.97None
Whole fly140 ± 44 of 4

Looking for FBgn0015360. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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