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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015371 through 18771 annotations produced 1 hits



charlatan (chn):

Annotation Number : CG11798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015371
Gbrowse : chr2R:11016420-11031662 (+) // 100.0 //
Probeset : 1627614_at
Accessions : protein= NP_001036546; /// NP_001036547; /// NP_611013; /// NP_995841;, nucleotide= NM_001043081; /// NM_001043082; /// NM_137169; /// NM_206119;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 000563
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0015371.
BioGrid reports that CG11798 interacts with CG15031 CG1242 CG2009 CG4922 CG5920 CG7324 CG8580 CG8635 CG7977 .
TRiP has 1 RNAi stocks for FBgn0015371 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain730 194 of 4 5.00Up
Head151 174 of 4 1.00None
Eye224 264 of 4 1.54None
Thoracicoabdominal ganglion381 304 of 4 2.60Up
Salivary gland31 23 of 4 0.22Down
Crop35 24 of 4 0.20Down
Midgut13 13 of 4 0.10Down
Tubule15 03 of 4 0.10Down
Hindgut39 24 of 4 0.30Down
Heart76 124 of 4 0.53Down
Fat body61 74 of 4 0.42Down
Ovary316 44 of 4 2.20Up
Testis6 12 of 4 0.00Down
Male accessory glands16 23 of 4 0.10Down
Virgin spermatheca31 44 of 4 0.22Down
Mated spermatheca42 74 of 4 0.29Down
Adult carcass39 24 of 4 0.30Down
Larval CNS212 164 of 4 1.46Up
Larval Salivary gland28 14 of 4 0.19Down
Larval midgut14 14 of 4 0.10Down
Larval tubule10 13 of 4 0.10Down
Larval hindgut42 24 of 4 0.29Down
Larval fat body16 21 of 4 0.10Down
Larval trachea178 194 of 4 1.23Up
Larval carcass53 34 of 4 0.37Down
S2 cells (growing)65 44 of 4 0.45Down
Whole fly145 84 of 4

Looking for FBgn0015371. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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