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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015372 through 18771 annotations produced 1 hits



chrowded (chrw):

Annotation Number : CG3870
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015372
Gbrowse : chr2R:19407361-19411096 (-) // 100.0 //
Probeset : 1624618_at
Accessions : protein= NP_524713;, nucleotide= NM_079974;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0015372.
Homophila reports that CG3870 is a close match (8e-13) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
TRiP has 1 RNAi stocks for FBgn0015372 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 ± 04 of 4 1.00None
Head87 ± 14 of 4 0.90Down
Eye130 ± 44 of 4 1.28Up
Thoracicoabdominal ganglion101 ± 34 of 4 1.00None
Salivary gland177 ± 44 of 4 1.74Up
Crop114 ± 44 of 4 1.10None
Midgut94 ± 84 of 4 0.90None
Tubule63 ± 24 of 4 0.60Down
Hindgut78 ± 14 of 4 0.80Down
Heart237 ± 324 of 4 2.33Up
Fat body128 ± 124 of 4 1.26Up
Ovary182 ± 34 of 4 1.80Up
Testis129 ± 54 of 4 1.30Up
Male accessory glands133 ± 74 of 4 1.30Up
Virgin spermatheca103 ± 64 of 4 1.01None
Mated spermatheca102 ± 74 of 4 1.01None
Adult carcass91 ± 54 of 4 0.90None
Larval CNS254 ± 394 of 4 2.49Up
Larval Salivary gland137 ± 124 of 4 1.35None
Larval midgut259 ± 394 of 4 2.54Up
Larval tubule105 ± 34 of 4 1.00None
Larval hindgut90 ± 64 of 4 0.88None
Larval fat body35 ± 84 of 4 0.40Down
Larval trachea83 ± 44 of 4 0.82Down
Larval carcass80 ± 34 of 4 0.79Down
S2 cells (growing)175 ± 54 of 4 1.72Up
Whole fly102 ± 44 of 4

Looking for FBgn0015372. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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