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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015374 through 18771 annotations produced 1 hits



courtless (crl):

Annotation Number : CG4443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015374
Gbrowse : chrX:16487711-16489453 (+) // 100.0 //
Probeset : 1626313_at
Accessions : protein= NP_524684;, nucleotide= NM_079945;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0015374.
BDGP gene expression has embryonic in situ data for crl: 4 pix of staining in 1 body parts.
Homophila reports that CG4443 is a close match (1e-11) to human gene RAD6A;UBE2A (NP_861442), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG4443 interacts with CG4968 CG5482 .
VDRC has 3 RNAi stocks for FBgn0015374 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain389 ± 74 of 4 1.00None
Head500 ± 144 of 4 1.30Up
Eye550 ± 44 of 4 1.46Up
Thoracicoabdominal ganglion367 ± 124 of 4 1.00None
Salivary gland884 ± 384 of 4 2.34Up
Crop981 ± 344 of 4 2.60Up
Midgut476 ± 144 of 4 1.30Up
Tubule961 ± 174 of 4 2.50Up
Hindgut700 ± 294 of 4 1.90Up
Heart631 ± 234 of 4 1.67Up
Fat body889 ± 524 of 4 2.36Up
Ovary393 ± 64 of 4 1.00None
Testis271 ± 274 of 4 0.70Down
Male accessory glands882 ± 454 of 4 2.30Up
Virgin spermatheca454 ± 154 of 4 1.20Up
Mated spermatheca477 ± 184 of 4 1.26Up
Adult carcass609 ± 264 of 4 1.60Up
Larval CNS438 ± 214 of 4 1.16Up
Larval Salivary gland796 ± 154 of 4 2.11Up
Larval midgut417 ± 104 of 4 1.11Up
Larval tubule353 ± 24 of 4 0.90Down
Larval hindgut535 ± 124 of 4 1.42Up
Larval fat body335 ± 204 of 4 0.90None
Larval trachea444 ± 144 of 4 1.18Up
Larval carcass450 ± 84 of 4 1.19Up
S2 cells (growing)437 ± 54 of 4 1.16Up
Whole fly377 ± 64 of 4

Looking for FBgn0015374. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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