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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015396 through 18771 annotations produced 1 hits



Domina (jumu):

Annotation Number : CG4029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015396
Gbrowse : chr3R:6175905-6187334 (+) // 99.77 //
Probeset : 1631242_at
Accessions : protein= NP_524302;, nucleotide= NM_079578;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007000 // nucleolus organization // inferred from mutant phen
Interpro : 0000785 // chromatin // inferred from direct assay /// 0000791 // euchromatin // inferred from direct assay /// 0005634
FlyMine data for FBgn0015396.
BDGP gene expression has embryonic in situ data for jumu: 45 pix of staining in 13 body parts.
Homophila reports that CG4029 is a close match (6e-13) to human gene AIS1;FOXD3 (NP_036315), a gene associated with {Autoimmune disease, susceptibility to, 1}, 607836 (3).
BioGrid reports that CG4029 interacts with CG5375 CG3839 .
TRiP has 1 RNAi stocks for FBgn0015396 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015396 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 84 of 4 2.10Up
Head13 04 of 4 0.40Down
Eye14 14 of 4 0.38Down
Thoracicoabdominal ganglion30 14 of 4 0.80None
Salivary gland11 41 of 4 0.29Down
Crop11 04 of 4 0.30Down
Midgut10 13 of 4 0.30Down
Tubule7 01 of 4 0.20Down
Hindgut9 04 of 4 0.30Down
Heart4 00 of 4 0.12Down
Fat body14 33 of 4 0.38Down
Ovary164 54 of 4 4.40Up
Testis6 04 of 4 0.20Down
Male accessory glands10 12 of 4 0.30Down
Virgin spermatheca26 14 of 4 0.71None
Mated spermatheca27 34 of 4 0.74None
Adult carcass12 22 of 4 0.30Down
Larval CNS688 1024 of 418.40Up
Larval Salivary gland75 84 of 4 2.03Up
Larval midgut33 44 of 4 0.89None
Larval tubule48 24 of 4 1.30None
Larval hindgut70 84 of 4 1.87Up
Larval fat body19 14 of 4 0.50Down
Larval trachea68 44 of 4 1.83Up
Larval carcass49 14 of 4 1.33None
S2 cells (growing)147 44 of 4 3.95Up
Whole fly37 54 of 4

Looking for FBgn0015396. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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