FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0015400 through 18771 annotations produced 1 hits

Kekkon-2 (kek2):

Annotation Number : CG4977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015400
Gbrowse : chr2L:11621818-11626131 (+) // 99.88 //
Probeset : 1630617_at
Accessions : protein= NP_523551;, nucleotide= NM_078827;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0015400.
Homophila reports that CG4977 is a close match (8e-11) to human gene TIL4;TLR2 (NP_003255), a gene associated with {Colorectal cancer, susceptibility to}, 114500 (3);{Leprosy, susceptibility to}, 246300 (3).
BioGrid reports that CG4977 interacts with CG5271 .
TRiP has 1 RNAi stocks for FBgn0015400 available for purchase.
VDRC has 6 RNAi stocks for FBgn0015400 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	155 ± 4	4 of 4	16.80	Up
Head	18 ± 2	4 of 4	2.00	Up
Eye	20 ± 3	4 of 4	2.23	Up
Thoracicoabdominal ganglion	109 ± 8	4 of 4	11.80	Up
Salivary gland	15 ± 6	0 of 4	1.64	None
Crop	8 ± 1	0 of 4	0.90	None
Midgut	4 ± 1	0 of 4	0.50	Down
Tubule	7 ± 0	0 of 4	0.80	Down
Hindgut	5 ± 1	0 of 4	0.50	None
Heart	6 ± 0	3 of 4	0.70	None
Fat body	10 ± 2	2 of 4	1.18	None
Ovary	2 ± 0	0 of 4	0.30	Down
Testis	3 ± 0	0 of 4	0.30	Down
Male accessory glands	5 ± 1	0 of 4	0.60	None
Virgin spermatheca	3 ± 1	0 of 4	0.38	Down
Mated spermatheca	6 ± 0	0 of 4	0.68	None
Adult carcass	10 ± 2	0 of 4	1.10	None
Larval CNS	69 ± 4	4 of 4	7.48	Up
Larval Salivary gland	3 ± 1	0 of 4	0.35	Down
Larval midgut	4 ± 2	0 of 4	0.49	None
Larval tubule	2 ± 0	0 of 4	0.30	Down
Larval hindgut	4 ± 1	0 of 4	0.46	Down
Larval fat body	5 ± 2	0 of 4	0.60	None
Larval trachea	1 ± 1	0 of 4	0.20	Down
Larval carcass	2 ± 1	0 of 4	0.31	Down
S2 cells (growing)	4 ± 0	0 of 4	0.46	Down
Whole fly	9 ± 1	2 of 4

Looking for FBgn0015400. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720