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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015402 through 18771 annotations produced 1 hits



Kinase suppressor of Ras (ksr):

Annotation Number : CG2899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015402
Gbrowse : chr3R:1305870-1309607 (-) // 100.0 //
Probeset : 1625295_at
Accessions : protein= NP_524236;, nucleotide= NM_079512;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // infer
Interpro : embryo // traceable author statement"
FlyMine data for FBgn0015402.
Homophila reports that CG2899 is a close match (9e-11) to human gene KIT;PBT (NP_001087241), a gene associated with Gastrointestinal stromal tumor, somatic, 606764 (3);Germ cell tumors, 273300 (3);Leukemia, acute myeloid, 601626 (3);Mast cell leukemia (3);Mastocytosis with associated hematologic disorder (3);Piebaldism (3).
BioGrid reports that CG2899 interacts with CG3166 CG3954 CG2845 CG2845 CG2845 CG9375 CG9375 CG9375 CG9375 CG18085 CG1856 CG15793 CG3126 CG9856 CG9856 CG9375 CG9375 CG9375 CG9375 CG3166 CG3166 CG3166 .
TRiP has 3 RNAi stocks for FBgn0015402 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015402 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 24 of 4 2.20Up
Head58 44 of 4 1.00None
Eye47 34 of 4 0.78Down
Thoracicoabdominal ganglion80 24 of 4 1.30Up
Salivary gland72 44 of 4 1.19None
Crop59 24 of 4 1.00None
Midgut25 14 of 4 0.40Down
Tubule48 24 of 4 0.80Down
Hindgut42 14 of 4 0.70Down
Heart47 44 of 4 0.77None
Fat body42 44 of 4 0.70Down
Ovary139 24 of 4 2.30Up
Testis49 24 of 4 0.80None
Male accessory glands76 64 of 4 1.30None
Virgin spermatheca47 24 of 4 0.78Down
Mated spermatheca56 14 of 4 0.92None
Adult carcass48 44 of 4 0.80None
Larval CNS86 24 of 4 1.41Up
Larval Salivary gland53 34 of 4 0.87None
Larval midgut36 14 of 4 0.60Down
Larval tubule33 34 of 4 0.60Down
Larval hindgut51 34 of 4 0.85None
Larval fat body39 54 of 4 0.60Down
Larval trachea73 84 of 4 1.19None
Larval carcass40 14 of 4 0.66Down
S2 cells (growing)67 24 of 4 1.10None
Whole fly61 44 of 4

Looking for FBgn0015402. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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