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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015477 through 18771 annotations produced 1 hits



Receptor mediated endocytosis 8 (Rme-8):

Annotation Number : CG8014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015477
Gbrowse : chr2R:5055260-5064685 (-) // 100.0 //
Probeset : 1640001_at
Accessions : protein= NP_610467;, nucleotide= NM_136623;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic a
FlyMine data for FBgn0015477.
VDRC has 3 RNAi stocks for FBgn0015477 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 54 of 4 1.30None
Head108 94 of 4 0.80None
Eye115 64 of 4 0.83None
Thoracicoabdominal ganglion136 24 of 4 1.00None
Salivary gland161 64 of 4 1.15None
Crop104 04 of 4 0.70Down
Midgut175 74 of 4 1.30Up
Tubule267 114 of 4 1.90Up
Hindgut147 74 of 4 1.10None
Heart208 84 of 4 1.49Up
Fat body89 74 of 4 0.64Down
Ovary274 54 of 4 2.00Up
Testis114 24 of 4 0.80None
Male accessory glands129 54 of 4 0.90None
Virgin spermatheca103 54 of 4 0.74Down
Mated spermatheca99 44 of 4 0.71Down
Adult carcass82 24 of 4 0.60Down
Larval CNS268 194 of 4 1.92Up
Larval Salivary gland224 134 of 4 1.61Up
Larval midgut218 44 of 4 1.56Up
Larval tubule294 54 of 4 2.10Up
Larval hindgut213 74 of 4 1.53Up
Larval fat body123 44 of 4 0.90None
Larval trachea163 114 of 4 1.17None
Larval carcass174 54 of 4 1.24Up
S2 cells (growing)384 74 of 4 2.74Up
Whole fly140 94 of 4

Looking for FBgn0015477. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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