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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015513 through 18771 annotations produced 1 hits



Myoblast City (mbc):

Annotation Number : CG10379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015513
Gbrowse : chr3R:19607507-19627396 (+) // 100.0 //
Probeset : 1631013_at
Accessions : protein= NP_477144;, nucleotide= NM_057796;
Pathway : 0001726 // ruffle // traceable author statement
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein bind
FlyMine data for FBgn0015513.
BDGP gene expression has embryonic in situ data for mbc: 17 pix of staining in 17 body parts.
BioGrid reports that CG10379 interacts with CG2871 CG5288 CG4893 CG4354 CG2248 CG8556 CG8222 CG32096 .
TRiP has 3 RNAi stocks for FBgn0015513 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015513 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain210 ± 204 of 4 1.10None
Head213 ± 64 of 4 1.10None
Eye99 ± 64 of 4 0.50Down
Thoracicoabdominal ganglion277 ± 94 of 4 1.40Up
Salivary gland171 ± 104 of 4 0.87None
Crop215 ± 34 of 4 1.10Up
Midgut312 ± 94 of 4 1.60Up
Tubule260 ± 104 of 4 1.30Up
Hindgut202 ± 54 of 4 1.00None
Heart243 ± 144 of 4 1.24Up
Fat body542 ± 244 of 4 2.75Up
Ovary428 ± 34 of 4 2.20Up
Testis51 ± 34 of 4 0.30Down
Male accessory glands92 ± 24 of 4 0.50Down
Virgin spermatheca498 ± 624 of 4 2.53Up
Mated spermatheca640 ± 274 of 4 3.25Up
Adult carcass249 ± 94 of 4 1.30Up
Larval CNS207 ± 154 of 4 1.06None
Larval Salivary gland164 ± 94 of 4 0.84Down
Larval midgut215 ± 94 of 4 1.09None
Larval tubule122 ± 44 of 4 0.60Down
Larval hindgut210 ± 54 of 4 1.07None
Larval fat body202 ± 154 of 4 1.00None
Larval trachea183 ± 114 of 4 0.93None
Larval carcass105 ± 24 of 4 0.53Down
S2 cells (growing)49 ± 54 of 4 0.25Down
Whole fly196 ± 54 of 4

Looking for FBgn0015513. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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