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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015519 through 18771 annotations produced 1 hits



Dalpha3 (nAcRalpha-7E):

Annotation Number : CG2302
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015519
Gbrowse : chrX:8176989-8223711 (-) // 100.0 //
Probeset : 1629258_at
Accessions : protein= NP_525079;, nucleotide= NM_080340;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005892 // nicotinic acetylcholine-gated receptor-
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cat
FlyMine data for FBgn0015519.
Homophila reports that CG2302 is a close match (8e-11) to human gene CAE2;ECA2;GABRG2;GEFSP3 (NP_944494), a gene associated with Epilepsy, childhood absence, 2, 607681 (3);Epilepsy, generalized, with febrile seizures plus, type 3, 604233 (3);Febrile convulsions, familial, 8, 611277 (3);Myoclonic epilepsy, severe, of infancy, 607208 (3).
TRiP has 1 RNAi stocks for FBgn0015519 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 74 of 433.80Up
Head19 12 of 4 5.50Up
Eye17 42 of 4 4.85Up
Thoracicoabdominal ganglion137 74 of 438.60Up
Salivary gland8 20 of 4 2.48None
Crop3 00 of 4 1.00None
Midgut5 10 of 4 1.50None
Tubule4 00 of 4 1.10Up
Hindgut12 30 of 4 3.50None
Heart6 10 of 4 1.89None
Fat body4 40 of 4 1.20None
Ovary5 00 of 4 1.50None
Testis5 20 of 4 1.50None
Male accessory glands34 60 of 4 9.80Up
Virgin spermatheca4 00 of 4 1.16None
Mated spermatheca10 30 of 4 2.78None
Adult carcass27 40 of 4 7.60Up
Larval CNS35 94 of 4 9.92Up
Larval Salivary gland15 30 of 4 4.30Up
Larval midgut5 10 of 4 1.52None
Larval tubule3 00 of 4 1.00None
Larval hindgut12 30 of 4 3.57None
Larval fat body3 00 of 4 0.90None
Larval trachea5 40 of 4 1.45None
Larval carcass17 20 of 4 4.95Up
S2 cells (growing)4 10 of 4 1.18None
Whole fly3 10 of 4

Looking for FBgn0015519. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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