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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015524 through 18771 annotations produced 2 hits



Orthopedia (otp):

Annotation Number : S.C2R002204
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015524
Gbrowse : chr2R:16784095-16791152 (-) // 100.0 //
Probeset : 1636692_at
Accessions : protein= NP_001036563; /// NP_001097388;, nucleotide= NM_001043098; /// NM_001103918;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0015524.
BDGP gene expression has embryonic in situ data for otp: 18 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0015524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 13 of 411.70Up
Head2 10 of 4 2.20None
Eye2 10 of 4 1.82None
Thoracicoabdominal ganglion14 12 of 411.60Up
Salivary gland9 40 of 4 7.78None
Crop2 10 of 4 1.60None
Midgut2 00 of 4 2.30None
Tubule4 00 of 4 3.20Up
Hindgut18 24 of 415.20Up
Heart2 10 of 4 1.69None
Fat body1 10 of 4 1.29None
Ovary0 00 of 4 0.70None
Testis0 00 of 4 0.60None
Male accessory glands4 00 of 4 3.40Up
Virgin spermatheca0 00 of 4 0.69None
Mated spermatheca0 00 of 4 0.67None
Adult carcass4 20 of 4 4.00None
Larval CNS9 14 of 4 7.41Up
Larval Salivary gland1 00 of 4 0.86None
Larval midgut4 10 of 4 3.29None
Larval tubule2 11 of 4 2.40None
Larval hindgut41 34 of 433.53Up
Larval fat body4 10 of 4 3.90None
Larval trachea0 00 of 4 0.73None
Larval carcass5 10 of 4 4.10Up
S2 cells (growing)1 00 of 4 0.94None
Whole fly1 00 of 4



Orthopedia (otp):

Annotation Number : CG10036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015524
Gbrowse : chr2R:16771996-16785088 (-) // 100.0 //
Probeset : 1636475_at
Accessions : protein= NP_001036563; /// NP_001097388;, nucleotide= NM_001043098; /// NM_001103918;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0015524.
BDGP gene expression has embryonic in situ data for otp: 18 pix of staining in 6 body parts.
Homophila reports that CG10036 is a close match (7e-11) to human gene IDG2;IGDS2;PITX2;RGS;RIEG1 (NP_700476), a gene associated with Iridogoniodysgenesis syndrome-2, 137600 (3);Rieger syndrome, 180500 (3);Ring dermoid of cornea, 180550 (3).
BioGrid reports that CG10036 interacts with CG7809 .
VDRC has 3 RNAi stocks for FBgn0015524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 4.70Up
Head2 10 of 4 0.90None
Eye1 00 of 4 0.59None
Thoracicoabdominal ganglion18 24 of 4 6.80Up
Salivary gland2 00 of 4 0.87None
Crop2 00 of 4 0.80None
Midgut2 00 of 4 0.90None
Tubule0 00 of 4 0.30Down
Hindgut90 24 of 432.90Up
Heart2 10 of 4 0.80None
Fat body2 20 of 4 0.84None
Ovary3 00 of 4 1.20None
Testis9 12 of 4 3.30Up
Male accessory glands6 20 of 4 2.20None
Virgin spermatheca0 00 of 4 0.32None
Mated spermatheca0 00 of 4 0.27None
Adult carcass6 20 of 4 2.20None
Larval CNS16 43 of 4 6.15Up
Larval Salivary gland1 00 of 4 0.50None
Larval midgut4 10 of 4 1.66None
Larval tubule1 00 of 4 0.50None
Larval hindgut154 84 of 456.02Up
Larval fat body2 00 of 4 0.90None
Larval trachea1 00 of 4 0.38None
Larval carcass12 30 of 4 4.54None
S2 cells (growing)2 00 of 4 0.74None
Whole fly2 10 of 4

Looking for FBgn0015524. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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