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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015544 through 18771 annotations produced 1 hits



spaghetti (spag):

Annotation Number : CG13570
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015544
Gbrowse : chr2R:20046887-20049021 (+) // 100.0 //
Probeset : 1635934_at
Accessions : protein= NP_524664;, nucleotide= NM_079925;
Pathway : thorax closure // inferred from mutant phenotype"
FlyMine data for FBgn0015544.
BioGrid reports that CG13570 interacts with CG17158 CG5792 CG5848 CG1836 .
TRiP has 2 RNAi stocks for FBgn0015544 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015544 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 24 of 4 0.80Down
Head58 14 of 4 0.40Down
Eye53 24 of 4 0.37Down
Thoracicoabdominal ganglion114 64 of 4 0.80Down
Salivary gland65 34 of 4 0.45Down
Crop65 14 of 4 0.50Down
Midgut75 24 of 4 0.50Down
Tubule47 44 of 4 0.30Down
Hindgut45 14 of 4 0.30Down
Heart49 34 of 4 0.34Down
Fat body48 24 of 4 0.33Down
Ovary298 64 of 4 2.00Up
Testis222 44 of 4 1.50Up
Male accessory glands80 54 of 4 0.50Down
Virgin spermatheca54 54 of 4 0.37Down
Mated spermatheca49 14 of 4 0.34Down
Adult carcass52 44 of 4 0.40Down
Larval CNS166 24 of 4 1.14Up
Larval Salivary gland102 14 of 4 0.70Down
Larval midgut59 24 of 4 0.41Down
Larval tubule57 14 of 4 0.40Down
Larval hindgut68 34 of 4 0.47Down
Larval fat body79 144 of 4 0.50Down
Larval trachea92 124 of 4 0.63Down
Larval carcass80 44 of 4 0.55Down
S2 cells (growing)92 44 of 4 0.64Down
Whole fly146 44 of 4

Looking for FBgn0015544. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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