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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015546 through 18771 annotations produced 1 hits



spellchecker (spel1):

Annotation Number : CG4215
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015546
Gbrowse : chr2L:14361921-14365699 (+) // 100.0 //
Probeset : 1630496_a_at
Accessions : protein= NP_001014482; /// NP_523565;, nucleotide= NM_001014482; /// NM_078841;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0015546.
Homophila reports that CG4215 is a close match (2e-18) to human gene GTBP;HNPCC5;MSH6 (NP_000170), a gene associated with Colorectal cancer, hereditary nonpolyposis, type 5 (3);Endometrial cancer, familial, 608089 (3);Mismatch repair cancer syndrome, 276300 (3);Ovarian cancer, endometrial type. 608089 (3).
TRiP has 1 RNAi stocks for FBgn0015546 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015546 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 34 of 4 0.40Down
Head42 ± 34 of 4 0.40Down
Eye36 ± 14 of 4 0.36Down
Thoracicoabdominal ganglion46 ± 04 of 4 0.50Down
Salivary gland15 ± 31 of 4 0.15Down
Crop56 ± 44 of 4 0.60Down
Midgut26 ± 24 of 4 0.30Down
Tubule65 ± 74 of 4 0.60Down
Hindgut51 ± 34 of 4 0.50Down
Heart19 ± 14 of 4 0.19Down
Fat body10 ± 11 of 4 0.10Down
Ovary291 ± 114 of 4 2.80Up
Testis30 ± 14 of 4 0.30Down
Male accessory glands21 ± 24 of 4 0.20Down
Virgin spermatheca36 ± 34 of 4 0.36Down
Mated spermatheca34 ± 44 of 4 0.34Down
Adult carcass38 ± 34 of 4 0.40Down
Larval CNS187 ± 294 of 4 1.83Up
Larval Salivary gland8 ± 12 of 4 0.09Down
Larval midgut32 ± 24 of 4 0.32Down
Larval tubule28 ± 14 of 4 0.30Down
Larval hindgut43 ± 54 of 4 0.42Down
Larval fat body13 ± 12 of 4 0.10Down
Larval trachea46 ± 114 of 4 0.46Down
Larval carcass28 ± 14 of 4 0.28Down
S2 cells (growing)63 ± 44 of 4 0.62Down
Whole fly102 ± 104 of 4

Looking for FBgn0015546. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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