FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0015553 through 18771 annotations produced 1 hits

tosca (tos):

Annotation Number : CG10387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015553
Gbrowse : chr2L:18679629-18682155 (-) // 100.0 //
Probeset : 1631396_at
Accessions : protein= NP_477145;, nucleotide= NM_057797;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electro
FlyMine data for FBgn0015553.
BioGrid reports that CG10387 interacts with CG1391 CG10652 CG11181 CG11227 CG12219 CG1259 CG14297 CG14643 CG15631 CG15811 CG17050 CG17211 CG17596 CG17934 CG18734 CG31839 CG3213 CG32647 CG3557 CG3929 CG4285 CG4328 CG4717 Dmel CG34168 CG5053 CG8216 CG8367 CG8383 CG8942 CG9938 .
TRiP has 2 RNAi stocks for FBgn0015553 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015553 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 1	0 of 4	0.10	Down
Head	6 ± 1	1 of 4	0.00	Down
Eye	4 ± 0	0 of 4	0.02	Down
Thoracicoabdominal ganglion	14 ± 1	0 of 4	0.10	Down
Salivary gland	20 ± 4	0 of 4	0.12	Down
Crop	2 ± 1	0 of 4	0.00	Down
Midgut	2 ± 1	0 of 4	0.00	Down
Tubule	3 ± 1	0 of 4	0.00	Down
Hindgut	3 ± 0	0 of 4	0.00	Down
Heart	2 ± 1	0 of 4	0.01	Down
Fat body	4 ± 3	0 of 4	0.03	Down
Ovary	580 ± 9	4 of 4	3.40	Up
Testis	4 ± 1	0 of 4	0.00	Down
Male accessory glands	15 ± 1	0 of 4	0.10	Down
Virgin spermatheca	1 ± 0	0 of 4	0.01	Down
Mated spermatheca	2 ± 1	0 of 4	0.01	Down
Adult carcass	8 ± 3	0 of 4	0.00	Down
Larval CNS	86 ± 5	4 of 4	0.51	Down
Larval Salivary gland	9 ± 1	0 of 4	0.06	Down
Larval midgut	6 ± 0	0 of 4	0.04	Down
Larval tubule	6 ± 1	0 of 4	0.00	Down
Larval hindgut	9 ± 1	0 of 4	0.06	Down
Larval fat body	10 ± 5	0 of 4	0.10	Down
Larval trachea	24 ± 2	4 of 4	0.14	Down
Larval carcass	19 ± 1	1 of 4	0.12	Down
S2 cells (growing)	45 ± 3	4 of 4	0.27	Down
Whole fly	170 ± 9	4 of 4

Looking for FBgn0015553. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720