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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0015553 through 18771 annotations produced 1 hits

tosca (tos):

Annotation Number : CG10387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015553
Gbrowse : chr2L:18679629-18682155 (-) // 100.0 //
Probeset : 1631396_at
Accessions : protein= NP_477145;, nucleotide= NM_057797;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electro
FlyMine data for FBgn0015553.
BioGrid reports that CG10387 interacts with CG1391 CG10652 CG11181 CG11227 CG12219 CG1259 CG14297 CG14643 CG15631 CG15811 CG17050 CG17211 CG17596 CG17934 CG18734 CG31839 CG3213 CG32647 CG3557 CG3929 CG4285 CG4328 CG4717 Dmel CG34168 CG5053 CG8216 CG8367 CG8383 CG8942 CG9938 .
TRiP has 2 RNAi stocks for FBgn0015553 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015553 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 10 of 4 0.10Down
Head6 11 of 4 0.00Down
Eye4 00 of 4 0.02Down
Thoracicoabdominal ganglion14 10 of 4 0.10Down
Salivary gland20 40 of 4 0.12Down
Crop2 10 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule3 10 of 4 0.00Down
Hindgut3 00 of 4 0.00Down
Heart2 10 of 4 0.01Down
Fat body4 30 of 4 0.03Down
Ovary580 94 of 4 3.40Up
Testis4 10 of 4 0.00Down
Male accessory glands15 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca2 10 of 4 0.01Down
Adult carcass8 30 of 4 0.00Down
Larval CNS86 54 of 4 0.51Down
Larval Salivary gland9 10 of 4 0.06Down
Larval midgut6 00 of 4 0.04Down
Larval tubule6 10 of 4 0.00Down
Larval hindgut9 10 of 4 0.06Down
Larval fat body10 50 of 4 0.10Down
Larval trachea24 24 of 4 0.14Down
Larval carcass19 11 of 4 0.12Down
S2 cells (growing)45 34 of 4 0.27Down
Whole fly170 94 of 4

Looking for FBgn0015553. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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