FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0015558 through 18771 annotations produced 2 hits

tweety (tty):

Annotation Number : CG1693
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015558
Gbrowse : chrX:21202346-21209988 (-) // 100.0 //
Probeset : 1641265_at
Accessions : protein= NP_542443;, nucleotide= NM_080712;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequen
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // infer
FlyMine data for FBgn0015558.
VDRC has 3 RNAi stocks for FBgn0015558 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	88 ± 4	4 of 4	16.30	Up
Head	8 ± 0	4 of 4	1.60	None
Eye	23 ± 2	4 of 4	4.25	Up
Thoracicoabdominal ganglion	59 ± 9	4 of 4	10.90	Up
Salivary gland	4 ± 2	0 of 4	0.84	None
Crop	3 ± 1	0 of 4	0.60	None
Midgut	1 ± 0	0 of 4	0.30	None
Tubule	2 ± 0	0 of 4	0.50	Down
Hindgut	4 ± 1	0 of 4	0.70	None
Heart	29 ± 3	4 of 4	5.40	Up
Fat body	38 ± 6	4 of 4	7.12	Up
Ovary	4 ± 1	3 of 4	0.90	None
Testis	7 ± 1	3 of 4	1.40	None
Male accessory glands	7 ± 2	0 of 4	1.40	None
Virgin spermatheca	35 ± 2	4 of 4	6.53	Up
Mated spermatheca	49 ± 2	4 of 4	9.08	Up
Adult carcass	20 ± 2	3 of 4	3.80	Up
Larval CNS	71 ± 15	4 of 4	13.14	Up
Larval Salivary gland	1 ± 0	0 of 4	0.34	None
Larval midgut	4 ± 0	0 of 4	0.80	None
Larval tubule	1 ± 0	0 of 4	0.30	None
Larval hindgut	4 ± 0	2 of 4	0.87	None
Larval fat body	5 ± 2	1 of 4	0.90	None
Larval trachea	4 ± 1	1 of 4	0.88	None
Larval carcass	2 ± 0	0 of 4	0.41	None
S2 cells (growing)	17 ± 3	4 of 4	3.26	Up
Whole fly	5 ± 1	1 of 4

tweety (tty):

Annotation Number : CG1693
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015558
Gbrowse : chrX:21203914-21209988 (-) // 100.0 //
Probeset : 1640596_a_at
Accessions : protein= NP_542443;, nucleotide= NM_080712;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequen
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005254 // chloride channel activity // infer
FlyMine data for FBgn0015558.
VDRC has 3 RNAi stocks for FBgn0015558 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	33 ± 1	4 of 4	8.30	Up
Head	5 ± 2	0 of 4	1.40	None
Eye	5 ± 2	0 of 4	1.36	None
Thoracicoabdominal ganglion	21 ± 2	0 of 4	5.50	Up
Salivary gland	4 ± 2	0 of 4	1.21	None
Crop	2 ± 0	0 of 4	0.50	None
Midgut	1 ± 0	0 of 4	0.50	None
Tubule	2 ± 0	0 of 4	0.60	Down
Hindgut	2 ± 0	0 of 4	0.70	None
Heart	7 ± 3	0 of 4	1.83	None
Fat body	25 ± 5	0 of 4	6.41	Up
Ovary	8 ± 1	0 of 4	2.00	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	2 ± 0	0 of 4	0.50	None
Virgin spermatheca	4 ± 0	0 of 4	1.15	None
Mated spermatheca	7 ± 1	0 of 4	1.88	None
Adult carcass	2 ± 0	0 of 4	0.70	None
Larval CNS	21 ± 4	0 of 4	5.46	Up
Larval Salivary gland	2 ± 0	0 of 4	0.52	None
Larval midgut	2 ± 0	0 of 4	0.64	None
Larval tubule	1 ± 0	0 of 4	0.50	None
Larval hindgut	4 ± 1	0 of 4	1.00	None
Larval fat body	2 ± 0	0 of 4	0.50	None
Larval trachea	3 ± 2	0 of 4	0.79	None
Larval carcass	3 ± 0	0 of 4	0.78	None
S2 cells (growing)	21 ± 2	1 of 4	5.30	Up
Whole fly	4 ± 1	0 of 4

Looking for FBgn0015558. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720