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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015576 through 18771 annotations produced 1 hits



fragment I (alpha-Est8):

Annotation Number : CG1121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015576
Gbrowse : chr3R:3335064-3341391 (-) // 100.0 //
Probeset : 1635893_at
Accessions : protein= NP_524259;, nucleotide= NM_079535;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0015576.
Homophila reports that CG1121 is a close match (2e-16) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
VDRC has 1 RNAi stocks for FBgn0015576 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 34 of 4 0.80None
Head444 ± 84 of 4 4.00Up
Eye473 ± 164 of 4 4.26Up
Thoracicoabdominal ganglion129 ± 44 of 4 1.20None
Salivary gland17 ± 20 of 4 0.16Down
Crop86 ± 14 of 4 0.80None
Midgut143 ± 54 of 4 1.30None
Tubule9 ± 11 of 4 0.10Down
Hindgut453 ± 74 of 4 4.10Up
Heart180 ± 144 of 4 1.63Up
Fat body353 ± 464 of 4 3.18Up
Ovary14 ± 14 of 4 0.10Down
Testis59 ± 14 of 4 0.50Down
Male accessory glands231 ± 94 of 4 2.10Up
Virgin spermatheca275 ± 134 of 4 2.48Up
Mated spermatheca476 ± 514 of 4 4.28Up
Adult carcass345 ± 74 of 4 3.10Up
Larval CNS19 ± 14 of 4 0.17Down
Larval Salivary gland16 ± 14 of 4 0.15Down
Larval midgut106 ± 114 of 4 0.96None
Larval tubule11 ± 11 of 4 0.10Down
Larval hindgut183 ± 254 of 4 1.65None
Larval fat body178 ± 314 of 4 1.60None
Larval trachea71 ± 114 of 4 0.64Down
Larval carcass29 ± 14 of 4 0.27Down
S2 cells (growing)6 ± 11 of 4 0.06Down
Whole fly111 ± 124 of 4

Looking for FBgn0015576. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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