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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0015600 through 18771 annotations produced 1 hits



toucan (toc):

Annotation Number : CG9660
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015600
Gbrowse : chr2L:3068344-3144613 (-) // 99.93 //
Probeset : 1641048_a_at
Accessions : protein= NP_001036329; /// NP_001097064; /// NP_477153; /// NP_722875; /// NP_722876; /// NP_722877;, nucleotide= NM_001042864; /// NM_001103594; /// NM_057805; /// NM_164524; /// NM_164525; /// NM_164526;
Pathway : 0000922 // spindle pole // inferred from direct assay /// 0005634 // nucleus // inferred from direct assay /// 0005634 /
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding //
FlyMine data for FBgn0015600.
BDGP gene expression has embryonic in situ data for toc: 80 pix of staining in 25 body parts.
VDRC has 2 RNAi stocks for FBgn0015600 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain603 64 of 4 3.80Up
Head263 104 of 4 1.70Up
Eye162 144 of 4 1.03None
Thoracicoabdominal ganglion438 54 of 4 2.80Up
Salivary gland593 394 of 4 3.75Up
Crop223 114 of 4 1.40Up
Midgut59 44 of 4 0.40Down
Tubule34 30 of 4 0.20Down
Hindgut209 14 of 4 1.30Up
Heart180 94 of 4 1.14None
Fat body200 94 of 4 1.27Up
Ovary298 74 of 4 1.90Up
Testis31 14 of 4 0.20Down
Male accessory glands341 174 of 4 2.20Up
Virgin spermatheca53 44 of 4 0.34Down
Mated spermatheca71 74 of 4 0.45Down
Adult carcass183 174 of 4 1.20None
Larval CNS262 174 of 4 1.66Up
Larval Salivary gland152 134 of 4 0.96None
Larval midgut121 134 of 4 0.77None
Larval tubule72 94 of 4 0.50Down
Larval hindgut121 104 of 4 0.77Down
Larval fat body24 50 of 4 0.20Down
Larval trachea118 254 of 4 0.75Down
Larval carcass223 114 of 4 1.41Up
S2 cells (growing)15 10 of 4 0.10Down
Whole fly158 94 of 4

Looking for FBgn0015600. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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